RetrogeneDB ID: retro_mputfur_1614

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897368.1:219687..220176(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000000321
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1614
GGAGAAGCTGCATATATGGAAGAATATGAAGAAAGTGGATTGTTGGAAACAGATGAGGCTACCCTAGACACAAGGAAAAT
AGTAGAAGCTTGTAAAACTAAAACTGATGCTGGAGGTGAAGATGCTATTTTGCTAACAAGAACTTATGACCTTTATATCA
CTTATGATAAATATTACCAGGCACCACAATTATGGTTGTTTGACTATGATGAGCAAAGTCAGCCTTTAACAGTTGAACAC
ATGTATGAAGACATCAGTCAAGATCATGTGAAGAAAACAGTGACCATTGAAAATCACCCTCATCTCCTACCACCTCCTAT
GTGTTCAGTTCATCCATGCAGGCATGCTGAGGTGATGAAGAAAATCATTGAGACTGTTTCAGAAGGAGGAGGAGAACTTG
GTGTTCATATGTATCTTCTAATTTTCTTGAAGTTTGTACAAGCTGCCATTCCAACAATAGAATATGACTACACAAGACAC
TTCAAAATG

Alignment

ORF - retro_mputfur_1614 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.87 %
• Parental protein coverage: 51.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GEAADMEEYEESGLLETDEATLDTRKIVEACKTKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYD
          GEAA.MEEYEESGLLETDEATLDTRKIVEACKTKTDAGGEDAIL.TRTYDLYITYDKYYQ.P.LWLF.YD
Retrocopy GEAAYMEEYEESGLLETDEATLDTRKIVEACKTKTDAGGEDAILLTRTYDLYITYDKYYQAPQLWLFDYD

Parental  EQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLL
          EQ.QPLTVEHMYEDISQDHVKKTVTIENHPHL.PPPMCSVHPCRHAEVMKKIIETV.EGGGELGVHMYLL
Retrocopy EQSQPLTVEHMYEDISQDHVKKTVTIENHPHLLPPPMCSVHPCRHAEVMKKIIETVSEGGGELGVHMYLL

Parental  IFLKFVQAVIPTIEYDYTRHFTM
          IFLKFVQA.IPTIEYDYTRHF.M
Retrocopy IFLKFVQAAIPTIEYDYTRHFKM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1614 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1614 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000018116	1 retrocopy	retro_amel_645,
Callithrix jacchus	ENSCJAG00000020358	1 retrocopy	retro_cjac_2756,
Equus caballus	ENSECAG00000011954	1 retrocopy	retro_ecab_594,
Homo sapiens	ENSG00000144848	1 retrocopy	retro_hsap_2479,
Gorilla gorilla	ENSGGOG00000006637	1 retrocopy	retro_ggor_1544,
Myotis lucifugus	ENSMLUG00000001573	1 retrocopy	retro_mluc_1025,
Macaca mulatta	ENSMMUG00000014232	1 retrocopy	retro_mmul_594,
Mustela putorius furo	ENSMPUG00000000321	2 retrocopies	retro_mputfur_1064, retro_mputfur_1614 ,
Nomascus leucogenys	ENSNLEG00000004302	2 retrocopies	retro_nleu_268, retro_nleu_331,
Oryctolagus cuniculus	ENSOCUG00000015651	1 retrocopy	retro_ocun_1219,
Pongo abelii	ENSPPYG00000013548	1 retrocopy	retro_pabe_1827,
Pan troglodytes	ENSPTRG00000015220	1 retrocopy	retro_ptro_1434,
Pteropus vampyrus	ENSPVAG00000009568	1 retrocopy	retro_pvam_1399,