RetrogeneDB ID: retro_mputfur_896

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896967.1:465098..465946(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CNN3
• Ensembl ID: ENSMPUG00000003332
• Aliases: None
• Description: calponin 3, acidic [Source:HGNC Symbol;Acc:2157]

Sequence

>retro_mputfur_896
ACCAACTCTCTGCTGTGCTTAAAAGATGGCACCATCCCCTACGAGCTCATCAACAAGCAATAGCCAAGCTCAGTGAAGGT
TAATGAGTCCCCATTAAACTGGCCTCAGTTGGAGAATATTGGCAACTTTATTAAAGCCATCCAGGCTTCTTATGACATGA
AGCCACATGACATATCTGAAGCAAATGATATTTTTGAGACTGGAAACATGACCCAGGTTCAGACTACACTGCTGGCTCTT
GCAGGTCTGGCTAAAATAAAAGGATTCCATACAACCCTTGACATTGGAGTTAAGTAGGCTGAAAAACAAACAAGACGTTT
TGATGAATGAAAATTAAAAGCTGGCCAAAATGTAACTGGTTTGCAGATGGGAACCAACAAAGGGCACCAGCCACACAGGT
ATGACAGTATGGGATCAGGAGGCATCTCTATGATCCCCAAATGCAAACTGACAAACCTACTGACCAGACCACAATTAGTC
TGCAGATGGGCCCCAACAAAGGAGCCAGCCTGGCGGGGATGTTAGCACCAGCTACCAGAGAAGACATCTATGATCAGAAG
CTAACATTACAACCAGCAGACAACGCGACGATGTCTCTACACATGAGAACCAACAAAGTTGCTTCCTGGAAAGGAATGAG
TGTGTTTGGGCTTGGGCGGCAAGTACATGATCCCAAATATGGCACTGCTTCCGCAGAACCTGTCATTCAGAGTGGAAGTC
AAGGGAAAGGAACAAACAGGTCTGAAATTAGTGGTAGTGATTATCAAGCAGAATACCCAGATGAATATCACGGTGAGTAC
CAAGATAACTACCCCCATTACCAATATGGCGACCAAGGCGCTGATTAT

Alignment

ORF - retro_mputfur_896 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.97 %
• Parental protein coverage: 86.32 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TNFQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQA-YGMKPHDIFEANDLFENGN
          TN..L.LKDG.I..ELINK..P.SVK.VNES.LNWPQLENIGNFIKAIQA.Y.MKPHDI.EAND.FE.GN
Retrocopy TNSLLCLKDGTIPYELINKQ*PSSVK-VNESPLNWPQLENIGNFIKAIQASYDMKPHDISEANDIFETGN

Parental  MTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQM-GTNKCASQAGMTAYG
          MTQVQTTL.ALAGLAK.KGFHTT.DIGVK.AEKQTRRFDE.KLKAGQ.V.GLQM.G....A.......YG
Retrocopy MTQVQTTLLALAGLAKIKGFHTTLDIGVK*AEKQTRRFDE*KLKAGQNVTGLQM<GNQQRAPATQV*QYG

Parental  TRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVA
          .RRHLYDP.MQTDKP.DQTTISLQMG.NKGAS.AGMLAP.TR.DIYDQKLTLQP.DN.T.SL.M.TNKVA
Retrocopy IRRHLYDPQMQTDKPTDQTTISLQMGPNKGASLAGMLAPATREDIYDQKLTLQPADNATMSLHMRTNKVA

Parental  SQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPDEYHGEYQDDYPREYQYG
          S.KGMSV.GLGRQV.DPKY..A..EPVI..GSQG.GTN.SEIS.SDYQAEYPDEYHGEYQD.YP..YQYG
Retrocopy SWKGMSVFGLGRQVHDPKYGTASAEPVIQSGSQGKGTNRSEISGSDYQAEYPDEYHGEYQDNYP-HYQYG

Parental  DQGIDY
          DQG.DY
Retrocopy DQGADY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_896 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_896 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000018128	3 retrocopies	retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Dasypus novemcinctus	ENSDNOG00000012883	3 retrocopies	retro_dnov_223, retro_dnov_403, retro_dnov_815,
Macropus eugenii	ENSMEUG00000002921	2 retrocopies	retro_meug_2020, retro_meug_42,
Monodelphis domestica	ENSMODG00000004326	1 retrocopy	retro_mdom_442,
Mustela putorius furo	ENSMPUG00000003332	1 retrocopy	retro_mputfur_896 ,
Sorex araneus	ENSSARG00000012874	1 retrocopy	retro_sara_582,
Sarcophilus harrisii	ENSSHAG00000002670	1 retrocopy	retro_shar_567,