RetrogeneDB ID: | retro_cjac_861 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:72694799..72695783(+) | ||
Located in intron of: | ENSCJAG00000011458 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSCJAG00000018128 | ||
Aliases: | CNN3, calponin-3 | ||
Description: | None |
Percent Identity: | 91.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSV |
MTHFNKGPSYGL.AEVKNKIASKYDHQAE.DLRNW.EEVTGMSIGTNFQLGLKDGIILCELINKLQPGSV | |
Retrocopy | MTHFNKGPSYGLLAEVKNKIASKYDHQAE-DLRNWMEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSV |
Parental | KKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDI |
KKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLF.NGNMTQVQ.TLVALAGLAKTKGFHTTIDI | |
Retrocopy | KKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLF*NGNMTQVQMTLVALAGLAKTKGFHTTIDI |
Parental | GVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGT |
GVKYAEKQTRRFDEGKLKAGQSVIGLQM.TNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGT | |
Retrocopy | GVKYAEKQTRRFDEGKLKAGQSVIGLQMRTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGT |
Parental | NKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPV |
NKGA.QAGMLAPGTRRDIYDQKLTLQPVDNSTISL.MGTNKVASQKGMSVYGLGR.VYDPKYCAAPTEPV | |
Retrocopy | NKGARQAGMLAPGTRRDIYDQKLTLQPVDNSTISLHMGTNKVASQKGMSVYGLGR*VYDPKYCAAPTEPV |
Parental | IHNGSQGTGTNGSEISDSDYQAEYPDEYHGEYQDDYPRDYPYSDQGIDY |
IHNGSQGTGTNG.EI.D..................YPRDYPYSDQGIDY | |
Retrocopy | IHNGSQGTGTNGLEIRDXXXXXXXXXXXXXXXXXXYPRDYPYSDQGIDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 1 .20 RPM | 59 .60 RPM |
SRP051959_heart | 1 .21 RPM | 62 .71 RPM |
SRP051959_kidney | 0 .91 RPM | 140 .53 RPM |
SRP051959_liver | 0 .41 RPM | 66 .80 RPM |
SRP051959_lung | 1 .35 RPM | 71 .95 RPM |
SRP051959_lymph_node | 1 .23 RPM | 18 .10 RPM |
SRP051959_skeletal_muscle | 0 .76 RPM | 17 .10 RPM |
SRP051959_spleen | 1 .49 RPM | 36 .95 RPM |