RetrogeneDB ID: | retro_cjac_1331 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 15:32586514..32587388(+) | ||
Located in intron of: | ENSCJAG00000010847 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSCJAG00000018128 | ||
Aliases: | CNN3, calponin-3 | ||
Description: | None |
Percent Identity: | 84.75 % |
Parental protein coverage: | 89.06 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | IEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFE |
IEEVTGMS.GTNFQLGLKDGIILC.LINKLQPGSVK.VNESSLNWPQLENIGNFIKAIQ.YG..PHD.FE | |
Retrocopy | IEEVTGMSTGTNFQLGLKDGIILCKLINKLQPGSVK-VNESSLNWPQLENIGNFIKAIQVYGIEPHDVFE |
Parental | ANDLFENGNMTQVQT-TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCA |
ANDLFE.GNMTQVQ..TLVA.AGLAKTKGFHTTID.GVKYAEKQTR.FDEGKLKAGQS.IGLQMGTNKCA | |
Retrocopy | ANDLFEYGNMTQVQR<TLVAVAGLAKTKGFHTTIDTGVKYAEKQTRCFDEGKLKAGQSAIGLQMGTNKCA |
Parental | SQ-AGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTI |
SQ.AGMTAYGTRRHLYDPKMQTDKPFDQT.ISL...TNKGAS..GMLAPGTRRD.YDQKLTLQPVDNS.I | |
Retrocopy | SQ<AGMTAYGTRRHLYDPKMQTDKPFDQTAISL*IVTNKGASPTGMLAPGTRRDMYDQKLTLQPVDNSRI |
Parental | SLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPDEYHGEYQ |
SLQMGTNKVASQK.MSV.GLG.QVYDPKYCAAP.EPVIHNGSQGTGTNGS.ISDSD.............. | |
Retrocopy | SLQMGTNKVASQKVMSV*GLGQQVYDPKYCAAPIEPVIHNGSQGTGTNGSVISDSDXXXXXXXXXXXXXX |
Parental | DDYPRDYPYSDQGID |
..YPRDYPYSDQ.ID | |
Retrocopy | XXYPRDYPYSDQAID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .93 RPM | 59 .60 RPM |
SRP051959_heart | 1 .40 RPM | 62 .71 RPM |
SRP051959_kidney | 1 .51 RPM | 140 .53 RPM |
SRP051959_liver | 0 .91 RPM | 66 .80 RPM |
SRP051959_lung | 2 .13 RPM | 71 .95 RPM |
SRP051959_lymph_node | 3 .47 RPM | 18 .10 RPM |
SRP051959_skeletal_muscle | 0 .48 RPM | 17 .10 RPM |
SRP051959_spleen | 2 .21 RPM | 36 .95 RPM |