RetrogeneDB ID: retro_nleu_1

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397277.1:11630418..11631867(+)
• Located in intron of: ENSNLEG00000011580

Retrocopy information

• Ensembl ID: ENSNLEG00000018892
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ZRSR2
• Ensembl ID: ENSNLEG00000009496
• Aliases: None
• Description: None

Sequence

>retro_nleu_1
ATGGCTGCACTCGAGAAGATGATGTTTCCCGAGAAGATGACGTTTCCAGAGAAACCAAGCCACAAAAAGTACAGGGCCGC
CCTGAAGAAGGAGAAACGAAAGAAACGTCGGCAGGAACTTGCTCGACTGAGAGACTCAGGACTCTTACAGAAGGAGGAGG
AGGACACTTTTATTGAAGAACAACAACTAGAAGAAGAGAAGCTATTGGAAAGAGAGAGGCAAAGATTACATGAGGAGTGG
TTGCTGAGAGAGCAGAAGGCACAAGAAGAATTCAGAATAAAGAAGGAAAAGGAAGAGGCGGCTAAAAAATGGCAAGAAGA
ACAAGAGAGAGAGTTAAAGGAACAATGGAAAGAACAGCAGAGGAAAGAGAGAGAAGAGGAGGAGCAGAAACAACAGGAGA
AGAAAGAAAAAGAGGAAGCTGTGCAGAAGATGCTGGATCAGGCTGAAAATGAGTTAGAAAATGGTACCATATGGCAAAAC
CCAGAACCACCCGTGGATTTCAGAGTAATGGAGAAGGATCGAGCTAATTGTCCCTTCTACAGTAAAACAGGAGCTTGCAG
ATTTGGACACAGATGTTCACGTAAACATAATTTCCCAACATCCAGTCCTACCCTTCTTATTAAGAGCATGTTTACAACGT
TTGGAATGGAGCAGTGCAGGAGGGATGACTATGACCCTGACGCAAGCCTGGAGTATAGCGAGGAAGAAACCTACCAACAG
TTCCTAGATTTCTATGAAGATGTGTTGCCCGAGTTCAAGAACGTGGGGAAAGTGATTCAGTTCAAGGTCAGCTGCAATTT
GGAACCTCACCTGAGGGGCAATGTATATGTTCAGTACCAGTCGGAAGAAGAATGCCAAGCAGCCCTTTCTCTGTTTAACG
GACGATGGTATGCAGGACGACAGCTGCAATGTGAATTCTGCCCAGTGACCCGGTGGAAAATGGCGATTTGTGGTTTATTT
GAAATACAACAATGTCCAAGAGGGAAACACTGCAACTTTCTTCATGTGTTCAGAAATCCCAACAATGAATTCTGGGAAGC
TAATAGAGACACCTACTTGTCTCCAGATCAGACTGGCTCCTCCTTTGGCAAGAACTCGGAGAGGAGGGAGAAGATGGGCC
ACCACGACCACTACTACAGCAGGCAGTGGGGAAGGAGAAACCCTAGTCCAGACCACTCCTGCAAAAGAAATGGGGAATCC
GAGAGAAAAAGGAGTAGTCACAGGGGGAAGAAATCTCACAAACGCACATCGAAGAGTCGGGAGAGGCACAATTCACCAAG
CAGAGGAAGAAATAGGCACCGCAGCCGGGACCAGGGCAGCCGGAGCCAGAGCCGCAGGAGCCGCAGGAGCCACCGCAGCC
GGAGCCAAAGTTCCTCTAGGTGCCGAAGTCATGGCAGGAGGAGGTCGGGTAATAGAGACAGAACTGTTCAGAGTCCCAAA
TCCAAATAA

Alignment

ORF - retro_nleu_1 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.51 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAPEKMTFPEKPSHKKYRAALKKEKRKKRRQELARLRDSGLSQKEEEEDTFIEEQQLEEEKLLERERQR
          M..PEKMTFPEKPSHKKYRAALKKEKRKKRRQELARLRDSGL.QKEEE.DTFIEEQQLEEEKLLERERQR
Retrocopy MMFPEKMTFPEKPSHKKYRAALKKEKRKKRRQELARLRDSGLLQKEEE-DTFIEEQQLEEEKLLERERQR

Parental  LHEEWLLREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQWEEQQRKEREEEEQKRQEKKEKEEALQKML
          LHEEWLLREQKAQEEFRIKKEKEEAAKK.QEEQER.LKEQW.EQQRKEREEEEQK.QEKKEKEEA.QKML
Retrocopy LHEEWLLREQKAQEEFRIKKEKEEAAKKWQEEQERELKEQWKEQQRKEREEEEQKQQEKKEKEEAVQKML

Parental  DQAENELENGTTWQNPEPPVDFRVMEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFG
          DQAENELENGT.WQNPEPPVDFRVMEKDRANCPFYSKTGACRFG.RCSRKHNFPTSSPTLLIKSMFTTFG
Retrocopy DQAENELENGTIWQNPEPPVDFRVMEKDRANCPFYSKTGACRFGHRCSRKHNFPTSSPTLLIKSMFTTFG

Parental  MEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEEC
          MEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEEC
Retrocopy MEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEEC

Parental  QAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSP
          QAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRD.YLSP
Retrocopy QAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDTYLSP

Parental  DRTGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKRSSHRGKKSHKRTSKSRERHNS
          D.TGSSFGKNSERRE.MGHHD.YYSR..GRRNPSPDHS.KRNGESERKRSSHRGKKSHKRTSKSRERHNS
Retrocopy DQTGSSFGKNSERREKMGHHDHYYSRQWGRRNPSPDHSCKRNGESERKRSSHRGKKSHKRTSKSRERHNS

Parental  RSRGRNRDRSRDHSRGRGSRSRSRRSRRSRSQSSSRSRSRGRRRSGNRDRTVQSPKSK
          .SRGRNR.RSRD....R....RSRRS.RSRSQSSSR.RS.GRRRSGNRDRTVQSPKSK
Retrocopy PSRGRNRHRSRDQG-SRSQSRRSRRSHRSRSQSSSRCRSHGRRRSGNRDRTVQSPKSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000009333	1 retrocopy	retro_fcat_44,
Homo sapiens	ENSG00000169249	1 retrocopy	retro_hsap_39,
Gorilla gorilla	ENSGGOG00000011962	1 retrocopy	retro_ggor_1422,
Macaca mulatta	ENSMMUG00000014054	1 retrocopy	retro_mmul_2030,
Mus musculus	ENSMUSG00000031370	1 retrocopy	retro_mmus_233,
Nomascus leucogenys	ENSNLEG00000009496	1 retrocopy	retro_nleu_1 ,
Nomascus leucogenys	ENSNLEG00000014737	1 retrocopy	retro_nleu_2382,
Pan troglodytes	ENSPTRG00000021693	1 retrocopy	retro_ptro_25,
Rattus norvegicus	ENSRNOG00000033176	1 retrocopy	retro_rnor_176,
Tarsius syrichta	ENSTSYG00000005278	1 retrocopy	retro_tsyr_1826,