RetrogeneDB ID:

retro_nleu_1493

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397296.1:20163373..20164117(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM58A
Ensembl ID:ENSNLEG00000013298
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1493
ATGGAGGGCCGGGAGGACGGCGGAGGGAGCCCTGCAGCGCGAGTCCACGAGGGTCCGTCGGCACCGGAAGCCAGGGTGCA
CTTTCGCGTGGCGATGTTCATTATGGAGGTAGGTGTCAAGCTAGGGATGCGGTCCATTCCCATTGCCACTGCTTGCACCA
TTTACCGTAAGTTCTTCTGCGAGACCAACCTGGACGCCTATGACCCTTACCTGATTGCCATGTCTTCCATTTACTTGGCG
GGCAAAGTGGAAGAGCAGCACCTGCGGGCTCGTGACATCATCAATGTGTCCAACAGGTACTTCAACCCAAGCAGTGGGCC
CCTGGAATTGGACTCCCGCTTCTGGGAGCTCCAGGACAGCATTGTGCAGTGTGAGCTTCTCATGCTGAGAGTTCTGCGCT
TCCAGGTCTCCTTCCAGCATCCACACAAGTACCTGCTCCACTACTTGGTTTCCCTCAAGAACTGGCTGAACCGCAACGGC
TGGCAGCGGACCCCAGTTGCCGTCACTGCCTGGGCCCTGCTGTGGGACAGCTACCACGGGGGACTGTGCCTCCGCTTCCA
GGCCCAGCACATCGCCGTGGCGGTGCTCTCCCTGGCCCTGCAGGTCTACGGAGTCGAGGTGCCCGCCAAGGTCGAGGCTG
AGAGGCCGTGGTGGCAGGTGTTTAGTGACGACCTTACCAAGCCAATCATTGATAATATTGTGTCTGATCTCATTCAGATT
TATACCATAGACACAGAGATCCCC

ORF - retro_nleu_1493 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.73 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMEAPEGGGGGPAARCPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPY
ME..E.GGG.PAAR..EG..APEARVHFRVA.FIME.GVKLGMRSIPIATACTIY.KFFCETNLDAYDPY
RetrocopyMEGREDGGGSPAARVHEGPSAPEARVHFRVAMFIMEVGVKLGMRSIPIATACTIYRKFFCETNLDAYDPY
ParentalLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPGGEPLELDSRFWELRDSIVQCELLMLRVLRFQVSFQH
LIAMSSIYLAGKVEEQHLR.RDIINVSNRYFNP...PLELDSRFWEL.DSIVQCELLMLRVLRFQVSFQH
RetrocopyLIAMSSIYLAGKVEEQHLRARDIINVSNRYFNPSSGPLELDSRFWELQDSIVQCELLMLRVLRFQVSFQH
ParentalPHKYLLHYLVSLKNWLNRHSWQRTPVAVTAWALLRDSYHGGLCLRFQAQHIAVAVLYLALQVYGVEVPAE
PHKYLLHYLVSLKNWLNR..WQRTPVAVTAWALL.DSYHGGLCLRFQAQHIAVAVL.LALQVYGVEVPA.
RetrocopyPHKYLLHYLVSLKNWLNRNGWQRTPVAVTAWALLWDSYHGGLCLRFQAQHIAVAVLSLALQVYGVEVPAK
ParentalVEAEKPWWQVFSDDLTKPIIDNIVSDLIQIYTMDTEIP
VEAE.PWWQVFSDDLTKPIIDNIVSDLIQIYT.DTEIP
RetrocopyVEAERPWWQVFSDDLTKPIIDNIVSDLIQIYTIDTEIP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1493 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000114071 retrocopy
Dipodomys ordii ENSDORG000000128461 retrocopy
Gorilla gorilla ENSGGOG000000270732 retrocopies
Macaca mulatta ENSMMUG000000114801 retrocopy
Nomascus leucogenys ENSNLEG00000013298 2 retrocopies
retro_nleu_1493 , retro_nleu_2416,
Otolemur garnettii ENSOGAG000000332791 retrocopy



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