RetrogeneDB ID: | retro_nleu_1493 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397296.1:20163373..20164117(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM58A | ||
Ensembl ID: | ENSNLEG00000013298 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEAPEGGGGGPAARCPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPY |
ME..E.GGG.PAAR..EG..APEARVHFRVA.FIME.GVKLGMRSIPIATACTIY.KFFCETNLDAYDPY | |
Retrocopy | MEGREDGGGSPAARVHEGPSAPEARVHFRVAMFIMEVGVKLGMRSIPIATACTIYRKFFCETNLDAYDPY |
Parental | LIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPGGEPLELDSRFWELRDSIVQCELLMLRVLRFQVSFQH |
LIAMSSIYLAGKVEEQHLR.RDIINVSNRYFNP...PLELDSRFWEL.DSIVQCELLMLRVLRFQVSFQH | |
Retrocopy | LIAMSSIYLAGKVEEQHLRARDIINVSNRYFNPSSGPLELDSRFWELQDSIVQCELLMLRVLRFQVSFQH |
Parental | PHKYLLHYLVSLKNWLNRHSWQRTPVAVTAWALLRDSYHGGLCLRFQAQHIAVAVLYLALQVYGVEVPAE |
PHKYLLHYLVSLKNWLNR..WQRTPVAVTAWALL.DSYHGGLCLRFQAQHIAVAVL.LALQVYGVEVPA. | |
Retrocopy | PHKYLLHYLVSLKNWLNRNGWQRTPVAVTAWALLWDSYHGGLCLRFQAQHIAVAVLSLALQVYGVEVPAK |
Parental | VEAEKPWWQVFSDDLTKPIIDNIVSDLIQIYTMDTEIP |
VEAE.PWWQVFSDDLTKPIIDNIVSDLIQIYT.DTEIP | |
Retrocopy | VEAERPWWQVFSDDLTKPIIDNIVSDLIQIYTIDTEIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011407 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012846 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027073 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011480 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013298 | 2 retrocopies |
retro_nleu_1493 , retro_nleu_2416,
|
Otolemur garnettii | ENSOGAG00000033279 | 1 retrocopy |