RetrogeneDB ID: retro_ogar_70

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873599.1:8791108..8791861(+)
• Located in intron of: ENSOGAG00000005855

Retrocopy information

• Ensembl ID: ENSOGAG00000026964
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000033279
• Aliases: None
• Description: None

Sequence

>retro_ogar_70
ATGGAGGCCGTTACTCCGCCGCGCTGCCGGGAAGGGGCCGCAGCCCTGGAGGTCGCAGGGCGGCTGGCGCCGGACACGAG
GGTGCACTTCCGCGTAACCAAGTTCATCATGGAGGCAGGAATCAAGCTAGGGATGCAGTCCGTTCCCATTGCCACTGCTT
GCACCATTTACCGTAAGTTCTTTTGTGAGACCAACGTGGACGCCTATGACCCTTACTTGGTCGCCATGTCTTCCATTTAC
TTGGCAGGCAAAGTGGAAGAGCAGCACCTGCGTACCCGTGACATCATCAATGTGGCCACCAGGTACTTTAATCCAGGCAG
CGAGCCGATGGAACTGGACTCCCACTTCTGGGAGCTCCGAGACAGCATGGTGCAGTGTGAGCTTCTCATGCTCAGAGTTT
TGCGTTTCCAGGTCTCCTTCCAGCACCCCCACAAGTACCTGCTCCACTACCTGCTGTCCCTCAAGAACTGGCTGAACCGT
TACAGCTGGCAGCGAACCCCCATTGCCATCACCGCCTGGGCCCTGCTACGGGACAGCTACCACGGGGCGCTGTGCCTCCG
CTTCCGGGCCCAGCACATTGCGGTGGCTGTGCTCTTCCTGGCCCTGCAAGTGTATGGAGTCGACGTGCCTGCCGAGGCCG
AGGCTGAGAAGCCATGGTGGCAGGTGTTTAGTGACGACCTTACCAAGCCAATCATTGATAATATTGTGTCTGACCTCGTT
CAAATTTATACCATGGACACAGAGCTCCCTTAA

Alignment

ORF - retro_ogar_70 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.6 %
• Parental protein coverage: 98.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEAAIPESGSGGAAVQGPEGRLAPDARVHFRVTRFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDTYD
          MEA..P.....GAA.....GRLAPD.RVHFRVT.FIMEAG.KLGM.S.PIATACTIY.KFFCETN.D.YD
Retrocopy MEAVTPPRCREGAAALEVAGRLAPDTRVHFRVTKFIMEAGIKLGMQSVPIATACTIYRKFFCETNVDAYD

Parental  PYLVAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSSEPLELDSRFWELRDSVVQCELLMLRVLRFQVSF
          PYLVAMSSIYLAGKVEEQHLRTRDIINV..RYFNP.SEP.ELDS.FWELRDS.VQCELLMLRVLRFQVSF
Retrocopy PYLVAMSSIYLAGKVEEQHLRTRDIINVATRYFNPGSEPMELDSHFWELRDSMVQCELLMLRVLRFQVSF

Parental  QHPHKYLLHYLLSLKNWLNRYSWQRTPIAITAWALLRDSYHGGLCLRFQAQHIAVAVLFLALQVYGVEVP
          QHPHKYLLHYLLSLKNWLNRYSWQRTPIAITAWALLRDSYHG.LCLRF.AQHIAVAVLFLALQVYGV.VP
Retrocopy QHPHKYLLHYLLSLKNWLNRYSWQRTPIAITAWALLRDSYHGALCLRFRAQHIAVAVLFLALQVYGVDVP

Parental  AEAEAEKPWWQVFSDDLTKAIIDNIVSDLIQIYTMDTELP
          AEAEAEKPWWQVFSDDLTK.IIDNIVSDL.QIYTMDTELP
Retrocopy AEAEAEKPWWQVFSDDLTKPIIDNIVSDLVQIYTMDTELP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_70 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011407	1 retrocopy	retro_cjac_1814,
Dipodomys ordii	ENSDORG00000012846	1 retrocopy	retro_dord_420,
Gorilla gorilla	ENSGGOG00000027073	2 retrocopies	retro_ggor_2302, retro_ggor_911,
Macaca mulatta	ENSMMUG00000011480	1 retrocopy	retro_mmul_557,
Nomascus leucogenys	ENSNLEG00000013298	2 retrocopies	retro_nleu_1493, retro_nleu_2416,
Otolemur garnettii	ENSOGAG00000000469	1 retrocopy	retro_ogar_2588,
Otolemur garnettii	ENSOGAG00000001116	1 retrocopy	retro_ogar_2123,
Otolemur garnettii	ENSOGAG00000033279	1 retrocopy	retro_ogar_70 ,