RetrogeneDB ID: retro_nleu_881

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397275.1:8820875..8821866(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ELL2
• Ensembl ID: ENSNLEG00000014192
• Aliases: None
• Description: None

Sequence

>retro_nleu_881
CAGCGCTATGGGCTGTCCTGCGACGGCTGGAGCAGGACCACATCACCATACTGCATGTGAAGCTCACGGAGAAGGCGATC
CGGGCGCTGGAGACTTACCAGAGCCACAAGAATTTAATTCCTTTTCGACCTTCAATTCAGTTCCAAAGACTCCAGGGGCT
TGTCAAAATTCCAAAAATGATCCCCTCAATGAAGTTCATAACTTTAACTTTTATTTGTCAAGTGTGGGCAAAGACAACCC
TCAGGGCAGCTTTGACTGCATCCAGCAAACATTCTCCAGCTCTGGAGCCTCCCAGCTCAATTGCCTGGGATTTATACAAG
ATAAAATTACAGTGTGTGCAACAAACACCTCGGATCAGATGACACGAGAAAGAATGACCCAGGCAGAGGAGGAATCCCGC
AACCGAAGCACAAAAGTTATCAAACTCGGTGGACCATATGTAGGGAAAAGAGTGCAAATTCGGAAAGCACCTCAAGCTGT
TTCAAATACAGTTCCTGAGAGGAAAAGGTCAACCCCCATGAACCCTGCAAATACAATTCGCAGCAGCAGCGTCTCTCAGA
GGCCATACAGGGGCAGGGTGATTCACTTAGTGGCCCTGAAGGCCTACAAGAAACCGGAGCTACTTGCTAGACTCCAGAAG
GATGGTGTCAATCAAAAAGACAAGAACTCCCAGGGAGCAATTCTGCAACAGGTAGCCAATCTGAATTCTAAGGACCTCTC
ATATACCTTAAAGGATTATGTTTTTAAAGAGCTTCAAAGAGACTGGCCGGGATACAGTGAAATAGACAGGCGGTCATTGG
AGTCAGTGCTCTCTAGAAAACTAAATCCATCTCAGAATGCTGCAGGCACCAGCCATTCAGAATCTCCTGTATGTTCTAGT
AGAGACGCTATATCTTCTCCTCAGAAACGGCTTTTGGATGCAGAGTTTATTGATCCTTTAATGAATAAAAAGGCCCAAAT
ATCTCACCTGACAAACAGTACCACCAACACT

Alignment

ORF - retro_nleu_881 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.1 %
• Parental protein coverage: 52.34 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QRYGLSCG-RLGQDNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLHGLVKIPK-NDPLNEVHN
          QRYGLSC..RL.QD.IT.LHVKLTE.AIRALETYQSHKNLIPFRPSIQFQ.L.GLVKIPK.NDPLNEVHN
Retrocopy QRYGLSCD<RLEQDHITILHVKLTEKAIRALETYQSHKNLIPFRPSIQFQRLQGLVKIPK<NDPLNEVHN

Parental  FNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATNDSYQMTRERMTQAEEESRNRST
          FNFYLS.VGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATN.S.QMTRERMTQAEEESRNRST
Retrocopy FNFYLSSVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATNTSDQMTRERMTQAEEESRNRST

Parental  KVIKPGGPYVGKRVQIRKAPQAVSDTVPERKRSTPMNPANTIRKTHSSSSVSQRPYRDRVIHLLALKAYK
          KVIK.GGPYVGKRVQIRKAPQAVS.TVPERKRSTPMNPANTIR....SSSVSQRPYR.RVIHL.ALKAYK
Retrocopy KVIKLGGPYVGKRVQIRKAPQAVSNTVPERKRSTPMNPANTIR----SSSVSQRPYRGRVIHLVALKAYK

Parental  KPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRK
          KPELLARLQKDGVNQKDKNS.GAILQQVANLN.KDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRK
Retrocopy KPELLARLQKDGVNQKDKNSQGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRK

Parental  LNPSQNAAGTSRSESPVCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPT
          LNPSQNAAGTS.SESPVCSSRDA.SSPQKRLLD.EFIDPLMNKKA.ISHLTN....T
Retrocopy LNPSQNAAGTSHSESPVCSSRDAISSPQKRLLDAEFIDPLMNKKAQISHLTNSTTNT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_881 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010607	1 retrocopy	retro_amel_651,
Dasypus novemcinctus	ENSDNOG00000005103	1 retrocopy	retro_dnov_1413,
Equus caballus	ENSECAG00000022933	1 retrocopy	retro_ecab_1092,
Homo sapiens	ENSG00000118985	1 retrocopy	retro_hsap_459,
Nomascus leucogenys	ENSNLEG00000014192	1 retrocopy	retro_nleu_881 ,
Pongo abelii	ENSPPYG00000015647	1 retrocopy	retro_pabe_1757,
Pan troglodytes	ENSPTRG00000017090	1 retrocopy	retro_ptro_346,