RetrogeneDB ID: | retro_ocun_380 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:94632834..94633264(-) | ||
Located in intron of: | ENSOCUG00000010493 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB2 | ||
Ensembl ID: | ENSOCUG00000001427 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:11155] |
Percent Identity: | 64. % |
Parental protein coverage: | 65.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMR-GQAFVIFKELGSSTNALRQL |
.DIRP.HTIYINN..D.I.KE.LKRSLY.L.SQFG..V.I.ALKTMKM..G.....FKEL.S.T.ALRQL | |
Retrocopy | LDIRPKHTIYINNIDDRI*KEGLKRSLYVLVSQFGFLVNITALKTMKMK<GAGLIRFKELASPTDALRQL |
Parental | QGFPFYGKPMR-IQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAAAAANKKPGQVIPNSANNQANS |
.GFPF.GKP...IQYAKTD.DI.SK..GTF.DKE.KK.K.....VE.A.A..NKKP..V..NSA..Q.NS | |
Retrocopy | *GFPFCGKPVQ<IQYAKTDCDITSKICGTFVDKEEKKTK----AVEHAVAIVNKKPDYVTFNSASDQGNS |
Parental | TPNPQVPDYP |
TPN.QVP..P | |
Retrocopy | TPNAQVPVFP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .31 RPM |
SRP017611_liver | 0 .00 RPM | 7 .09 RPM |