RetrogeneDB ID: | retro_tbel_3534 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_143851:202108..202689(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB2 | ||
Ensembl ID: | ENSTBEG00000012892 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:11155] |
Percent Identity: | 86.15 % |
Parental protein coverage: | 86.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQ |
MDI.P.HTIYINN.ND.IKKEELKRS.YALFSQFGHVVDIVA.KTMK.RGQAFVIFKEL.SSTNALRQLQ | |
Retrocopy | MDI*PYHTIYINNTNDEIKKEELKRSMYALFSQFGHVVDIVAFKTMKIRGQAFVIFKELDSSTNALRQLQ |
Parental | GFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAATTANKKPGQGTPNSANTQGNSTP |
G.PFYGKPM.IQYAKTDSDIISKM.GTFAD............VEQAATTANKKPGQGTPNSANTQGNSTP | |
Retrocopy | GYPFYGKPMQIQYAKTDSDIISKMHGTFADXXXXXXXXXXXXVEQAATTANKKPGQGTPNSANTQGNSTP |
Parental | NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPG-RHDIAFVEF |
NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL.PG..HD.AFVEF | |
Retrocopy | NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLAPG<KHDSAFVEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |