RetrogeneDB ID: | retro_rnor_962 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:58506512..58507172(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Snrpb2 | ||
Ensembl ID: | ENSRNOG00000004967 | ||
Aliases: | None | ||
Description: | U2 small nuclear ribonucleoprotein B'' [Source:RefSeq peptide;Acc:NP_001102062] |
Percent Identity: | 85.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQ |
M.IR.NHTIYINNMNDKIK.EELKRSLYALFSQFGHVVD.VALK..K.RGQA.VIFKELGSSTNALRQL. | |
Retrocopy | MGIRQNHTIYINNMNDKIKQEELKRSLYALFSQFGHVVDVVALK--KARGQACVIFKELGSSTNALRQLL |
Parental | GFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNSANTQGNAAP |
G.PF.GKPMRIQYAKTDS.IISKM.GTFAD....KEKK.A.TMEQAAAAAN.KPG.GT.NSANTQG.AAP | |
Retrocopy | GLPFSGKPMRIQYAKTDSNIISKMCGTFAD----KEKKEAPTMEQAAAAANRKPGPGTRNSANTQGDAAP |
Parental | NPQVPDYPPNYIL-FLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQG |
NPQVPD.P..YIL.FLNNLPE.TNEMMLSMLFNQFPGFKEV..VPGRHDIAFVEFENDGQAGAARDAL.G | |
Retrocopy | NPQVPD*PADYILLFLNNLPEQTNEMMLSMLFNQFPGFKEVCSVPGRHDIAFVEFENDGQAGAARDALHG |
Parental | FKITPSHAMKITYAKK |
FKITP.HAMKI.YAKK | |
Retrocopy | FKITPAHAMKIPYAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .47 RPM |
SRP017611_liver | 0 .00 RPM | 5 .65 RPM |