RetrogeneDB ID: | retro_ocun_922 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:63803448..63803915(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1B3 | ||
Ensembl ID: | ENSOCUG00000009848 | ||
Aliases: | EEF1B3, EEF1B, EF1B | ||
Description: | eukaryotic translation elongation factor 1 beta 3 (EEF1B3), mRNA [Source:RefSeq mRNA;Acc:NM_001082399] |
Percent Identity: | 65.66 % |
Parental protein coverage: | 71.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSG-PPPADL-CHALRWY-NHIKSYEKEKA |
MGF.DLKS...L..LNDY.ADKSYI.G.VPSQA..AVFEAVSG...P.DL..H.LRWY..HIKSYEKEK. | |
Retrocopy | MGFRDLKSLTCLW-LNDYGADKSYIRGHVPSQAALAVFEAVSG>TQPTDL>DHTLRWY<YHIKSYEKEKP |
Parental | SLPGIKKAL-GRYGP-ADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEA-KRLREERLAQYESKKAKKP |
SLPG.KK.L.G...P.ADVEDTTGSG.TDS..D.DIDLFG.D..EE.E...K.LREE.LAQ.ESK...K. | |
Retrocopy | SLPGVKKKL>GQEWP>ADVEDTTGSGTTDS--DNDIDLFGPDKKEEHEDG<KGLREE*LAQSESK--SKA |
Parental | ALVAKSSILLDVKPWDDETDMVKLEE |
.LVAK.SI..D.K.WDD.T...KL.E | |
Retrocopy | TLVAKTSIFHDIKSWDDKTNRTKLDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 124 .78 RPM |
SRP017611_kidney | 0 .00 RPM | 188 .93 RPM |
SRP017611_liver | 0 .00 RPM | 93 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029635 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005805 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000014496 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000007002 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000002654 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000016602 | 8 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009848 | 4 retrocopies | |
Oreochromis niloticus | ENSONIG00000017630 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000017163 | 3 retrocopies | |
Oryzias latipes | ENSORLG00000018533 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013107 | 7 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017853 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005437 | 3 retrocopies | |
Xiphophorus maculatus | ENSXMAG00000006050 | 1 retrocopy |