Parental gene:

EEF1B2, ENSCPOG00000014496

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_13:39890338..39892825(+)


>ENSCPOG00000014496
ATGGGTTTTGGAGACCTGAAAAGCCCCGCCGGCCTGCAGGTGCTCAACGATTACCTGGCGGACCGGAGCTACATCGAGGG
GTTCGTGCCCTCGCAAGCCGATGTGGCCGTGTTCGAAGCCATCGCCTGCCCGCCGCCCGCCGACTTGTTTCACGCCCTGC
GCTGGTACAATCACATCAAGTCTTACGAAAAGGAAAAGGCCAGTCTGCCAGGAGTGAAGAAAGCTTTGGGAAAGTATGGC
CCTGCTGATGTAGAAGACACCACCGGAAGTGGGGCTGCAGACAGCAAAGACGATGACGACATTGATCTCTTCGGGTCTGA
TGATGAAGAGGAAAGTGAAGAAGCAAAGAGGCTAAGGGAGGAACGGCTGGCACAGTACGAGTCCAAGAAAGCCAAAAAAC
CTGCACTTGTTGCCAAGTCTTCCATCTTGCTAGACGTGAAGCCCTGGGATGACGAGACAGACATGGGGAAGTTAGAGGAG
TGCGTCCGCAGCATTCAGGCCGACGGCTTGGTCTGGGGTTCCTCTAAACTGGTTCCAGTGGGCTATGGAATTAAAAAGCT
GCAGATACAGTGCGTGGTCGAAGATGATAAAGTCGGGACAGACCTGCTGGAGGAGCGGATCACTGCTTTCGAGGACTACG
TGCAGTCCATGGATGTGGCCGCCTTTAACAAAATCTAG

Library Parental gene expression (RPM)
SRP017611_brain 56 .48 RPM
SRP017611_kidney 110 .34 RPM
SRP017611_liver 127 .01 RPM
SRP040447_lung 135 .69 RPM
SRP040447_skeletal_muscle 108 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029635 possible_ortholog 1 retrogene
retro_cfam_56,
Callithrix jacchus ENSCJAG00000005805 possible_ortholog 2 retrogenes
retro_cjac_176, retro_cjac_341,
Gorilla gorilla ENSGGOG00000007002 possible_ortholog 2 retrogenes
retro_ggor_134, retro_ggor_2000,
Macropus eugenii ENSMEUG00000002654 ortholog_one2one 8 retrogenes
retro_meug_1418, retro_meug_1846, retro_meug_1917, retro_meug_240, retro_meug_241, retro_meug_52, retro_meug_775, retro_meug_949,
Myotis lucifugus ENSMLUG00000016602 ortholog_one2one 8 retrogenes
retro_mluc_1035, retro_mluc_1068, retro_mluc_1104, retro_mluc_1167, retro_mluc_1542, retro_mluc_1578, retro_mluc_1681, retro_mluc_1857,
Oryctolagus cuniculus ENSOCUG00000009848 ortholog_one2one 4 retrogenes
retro_ocun_1014, retro_ocun_1240, retro_ocun_544, retro_ocun_922,
Oreochromis niloticus ENSONIG00000017630 ortholog_one2many 1 retrogene
retro_onil_28,
Ochotona princeps ENSOPRG00000017163 ortholog_one2one 3 retrogenes
retro_opri_1192, retro_opri_294, retro_opri_748,
Oryzias latipes ENSORLG00000018533 ortholog_one2many 1 retrogene
retro_olat_16,
Pongo abelii ENSPPYG00000013107 possible_ortholog 7 retrogenes
retro_pabe_1251, retro_pabe_1656, retro_pabe_2163, retro_pabe_2389, retro_pabe_2419, retro_pabe_2746, retro_pabe_2876,
Sarcophilus harrisii ENSSHAG00000017853 ortholog_one2many 1 retrogene
retro_shar_208,
Ictidomys tridecemlineatus ENSSTOG00000005437 possible_ortholog 3 retrogenes
retro_itri_1263, retro_itri_813, retro_itri_873,
Xiphophorus maculatus ENSXMAG00000006050 ortholog_one2many 1 retrogene
retro_xmac_21,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_296 59.34 78.67
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2. retro_cpor_1116 65.52 88.89
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3. retro_cpor_1381 68.52 70.67
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4. retro_cpor_1407 72.26 60.00
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Download FASTA sequences of all ENSCPOG00000014496 retrocopies