RetrogeneDB ID: retro_ogar_120

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873591.1:6546728..6547850(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000028500
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005340
• Aliases: None
• Description: None

Sequence

>retro_ogar_120
ATGGAGGGGAACAGGGATGAGGCAGAGAAATGTGTCGACATCGCCCAGAAGGCCCTGATCCTCGGCAACCGAGAGAAGGC
CCAGCACTTTCTGCAGAGGGCTGAGAAGCTCTACCCGCTGCCCTCGGCCCGCACACTTTTGAAAATAATTATAAAAAATG
GAAGCATAGCTAGAAATGGCCCTCATTGCCAAAAACTATCAGGAGGTGGTGGTCAAAGCAAGCCTAATTGCACAAAGTAC
AGCACATCTGGTACTGAAAGCGGAAAAGGCTATAGCAGAAACCAAGTAGATGGAGTTCTTGGCATAAACAAATGTGAAAA
TTACTATGAAGTACTTGGAGTTACGAAAGATGCTGGTTGTGAAGATTTGAAAAAAGCTTATAGAAAGCTTGCTTTGAAGT
TTCATCCTGACAAAAACTATGCACCTGGAGCAACAGATGCTTTTAAAAAGATTGGAAATGCTTATGCTGTTTTAAGCAAT
CCAGAAAAACGGGAACAATATGACCTCACAGGCAATGAAGAACAAGCTAGTAATCATGAAAATAATGTCAGATTTAATTC
TCCTAAAGGTGAAGCTGATATAACTCCAGAAGACTTGTTTGATACAGTTTTTAGTGGTGGAGTTCCTGCAGATAATGAAC
ATTCATTTTCAAATGGACACCGCCAACATCAACATGGATATAGTGGCCATGAAAGAGAAGAAGAAAGAGGAGATGGACTT
TTTTCTTTGTTTATCCAGCTGATGCCCTTTATTGTATTGATCTTCGGTTCATTATTAAGCCAATTGGTGCTCTTTGATCC
TCCTTACTCCTTATATCCTAGATCTGGATCAGGGCAAACCATTAAAATGGAGACAGAAAATTTGGGTGTTGTTTATTATG
TCGACCAGGACTTTAAAAATGAATATAAAGGAATATTCTTACAGAAGGTAGAAAAGAGTGTAGAAGAAGATTATGTGACT
AATATTCAAAATAATTGCTGGAAAGAAAAACAACAGAAAACAGATATGCAATATGCAGCAAAAGTATACCATGATGAGGA
TCTCCAAAGGAAGGCAGATGCCTTGAGCATGGACAACTGTAAGGAATTAGAGCGACTGACCAGTCTTTATGAAGGAAGGT
GA

Alignment

ORF - retro_ogar_120 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.89 %
• Parental protein coverage: 99.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEGNRDEAEKCVEIAREALNVGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNSAHCRKPSGGG
          MEGNRDEAEKCV.IA..AL..GNREKAQ.FLQ.AEKLYPLPSAR.LL.II.KNGS.A.N..HC.K.SGGG
Retrocopy MEGNRDEAEKCVDIAQKALILGNREKAQHFLQRAEKLYPLPSARTLLKIIIKNGSIARNGPHCQKLSGGG

Parental  DQSKPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKNYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKN
          .QSKPNCTK.STSG..E.GKGY...QVDGVL.INKC.NYYEVLGVTKDAG.EDLKKAYRKLALKFHPDKN
Retrocopy GQSKPNCTKYSTSGT-ESGKGYSRNQVDGVLGINKCENYYEVLGVTKDAGCEDLKKAYRKLALKFHPDKN

Parental  HAPGATDAFKKIGNAYAVLSNPEKRKQYDITGNEEQACNHQNNGRFNFHRGCEADITPEDLFNIFFGGGF
          .APGATDAFKKIGNAYAVLSNPEKR.QYD.TGNEEQA.NH.NN.RFN...G.EADITPEDLF...F.GG.
Retrocopy YAPGATDAFKKIGNAYAVLSNPEKREQYDLTGNEEQASNHENNVRFNSPKG-EADITPEDLFDTVFSGGV

Parental  PSGSVHSFSNGRAGYSHQHQHQHSGHEREEERGDGGFSVFIQLMPIIVLILVSLLSQLMVSNPPYSLYPR
          P....HSFSNG......QHQH..SGHEREEERGDG.FS.FIQLMP.IVLI..SLLSQL....PPYSLYPR
Retrocopy PADNEHSFSNGH----RQHQHGYSGHEREEERGDGLFSLFIQLMPFIVLIFGSLLSQLVLFDPPYSLYPR

Parental  SGSGQIIKMQTENLGVVYYVNKDFKNEYKGMLLQKVEKSVEEDYVTNIRNNCWKERQQKTDMQYAAKVYR
          SGSGQ.IKM.TENLGVVYYV..DFKNEYKG..LQKVEKSVEEDYVTNI.NNCWKE.QQKTDMQYAAKVY.
Retrocopy SGSGQTIKMETENLGVVYYVDQDFKNEYKGIFLQKVEKSVEEDYVTNIQNNCWKEKQQKTDMQYAAKVYH

Parental  DDRLRRKADALSMDNCKELERLTSLYKG
          D..L.RKADALSMDNCKELERLTSLY.G
Retrocopy DEDLQRKADALSMDNCKELERLTSLYEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_120 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000012468	1 retrocopy	retro_acar_144,
Homo sapiens	ENSG00000164031	1 retrocopy	retro_hsap_1583,
Monodelphis domestica	ENSMODG00000020687	2 retrocopies	retro_mdom_1398, retro_mdom_752,
Nomascus leucogenys	ENSNLEG00000013668	2 retrocopies	retro_nleu_1761, retro_nleu_2409,
Otolemur garnettii	ENSOGAG00000005340	1 retrocopy	retro_ogar_120 ,
Pongo abelii	ENSPPYG00000014956	3 retrocopies	retro_pabe_1304, retro_pabe_982, retro_pabe_983,
Pan troglodytes	ENSPTRG00000016311	1 retrocopy	retro_ptro_1066,
Ictidomys tridecemlineatus	ENSSTOG00000021338	1 retrocopy	retro_itri_1840,