RetrogeneDB ID: retro_ogar_1389

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873544.1:20687927..20688163(-)
• Located in intron of: ENSOGAG00000010290

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000011167
• Aliases: None
• Description: None

Sequence

>retro_ogar_1389
GAAGAGGAGGTCCAGGAGCAGCAGCCATTCTCTTACCAACAGAGACTAACAGCAGCAGTTCACTACACTGTTGGTTGTCT
TTGTGAGGAAGTTGCAGCACACAAAAAGATGCAGTTCAGCGAACAGACCATTGCATCAATTTCAGTGATGACTTCTGACA
GCGTGAAAATTTCGCCAAAGACCTTGAAACTACTAAAGTCACTGCTAAAATATACACAGAGAAAAATGAAGAGATT

Alignment

ORF - retro_ogar_1389 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.25 %
• Parental protein coverage: 57.25 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EETAEEQQQFSYQQRLKAAVHYTVGRLCEEVAVDKEMQFSKQTIAAISEMT-FRQCENFAKDLEMFARHA
          EE...EQQ.FSYQQRL.AAVHYTVG.LCEEVA..K.MQFS.QTIA.IS.MT.F.Q.ENFAKDLE.....A
Retrocopy EEEVQEQQPFSYQQRLTAAVHYTVGCLCEEVAAHKKMQFSEQTIASISVMT<F*QRENFAKDLETTKVTA

Parental  KRSTITTEDV
          K..T...E..
Retrocopy KIYTEKNEEI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1389 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000135	1 retrocopy	retro_cjac_3133,
Otolemur garnettii	ENSOGAG00000011167	2 retrocopies	retro_ogar_1389 , retro_ogar_2936,