RetrogeneDB ID: retro_ogar_2936

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873684.1:2344331..2344696(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000011167
• Aliases: None
• Description: None

Sequence

>retro_ogar_2936
GAGAGGCTCCAGGCAGCCGTTCCCTACCCTGCTGGCTGCCTGTGGGAGGAAGTTGTGGCAGACAGAGAGATGTAGTTCAA
CTAACAGCCCATTGCAGCAATTTCAGAGATGACCTTTCCACAGTGGGAAAATTTTGCCAAAGACCTTGAAATGCTTGCAA
GACAAGTGGAAAGAGCCACAGTGAACACTGAAGACGTGAAGCTCCTAGCCAGGAAGAATCATTCCCTGGCAAAAGGCATC
CCAGAGAAAAGTGAAGAGATTGCTCAGATTAACCTAAAAGGAAAGGCAAAGAAGCAAAAGAAGTTAGAGGATGGAAACAC
AAATTTAAATGAGCAGCAGAGGCTGGAGCAGCAGAATGTGAGAAT

Alignment

ORF - retro_ogar_2936 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.48 %
• Parental protein coverage: 88.41 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QRLKAAVHYTVGRLCEEVAVDKEMQFSKQTIAAISEMTFRQCENFAKDLEMFARHAKRSTITTEDVKLLA
          .RL.AAV.Y..G.L.EEV..D.EM.F..Q.IAAISEMTF.Q.ENFAKDLEM.AR...R.T..TEDVKLLA
Retrocopy ERLQAAVPYPAGCLWEEVVADREM*FN*QPIAAISEMTFPQWENFAKDLEMLARQVERATVNTEDVKLLA

Parental  RRSNSLVKYITEKSEEIAQINLERKAKKKKKLEDENKNVNE-PAEAGAEENED
          R...SL.K.I.EKSEEIAQINL..KAKK.KKLED.N.N.NE..AEAGA.E.E.
Retrocopy RKNHSLAKGIPEKSEEIAQINLKGKAKKQKKLEDGNTNLNE<AAEAGAAECEN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2936 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000135	1 retrocopy	retro_cjac_3133,
Otolemur garnettii	ENSOGAG00000011167	2 retrocopies	retro_ogar_1389, retro_ogar_2936 ,