RetrogeneDB ID:

retro_ogar_165

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873527.1:26549678..26550566(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000032867
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000012543
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_165
ATGGCTAGCAATGTTACCAACAAGACAGACCCTCGCTCCATGAACTCCCGTGTATTCATTGGGAATCTCAACACTCTTGT
GGTGAAGAAGTCTGATGTGGAAGCAATTTTCTCGAAATATGGCAAAATTGTGGGTTGCTCTGTTCACAAGGGCTTTGCCT
TTGTTCAGTATGTTAATGAGAGGAATGCCCGGGCTGCTGTAGCAGGAGAGGATGGCAGAAGGATTGCTGGCCAAGTTTTA
GATATTAATCTGGCTGCAGAGCCAAAAGTGAATCGAGGAAAAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGCTC
CTCTTTTGACTTGGATTATGACTTTCAACGGGATTATTATGACAGGATGTACAGTTACCCAGCACGTGTTCCTCCTCCTC
CTCCTATTGCTCGGGCTGTGGTGCCCTCAAAACGCCAGCGTGTATCAGGGAACACCTCACGAAGGGGGAAAAGTGGCTTC
AATTCTAAGAGTGGACAGCGAGGTTCGTCTTCCAAGTCTGGAAAATTGAAAGGAGATGACCTTCAGGCCATTAAGAAGGA
ATTGAATCAGATAAAACAAAAAGTGGATTCTTTACTGGAAAACCTGGAAAAAATTGAAAAGGAGCAGAGCAAGCAAGCAG
CAGTAGAGCTGAAGAATGAGAAGTCAGAAGAGGAGCAGAGCAGCAGCTCCCTGAAGAAAGATGAGACTAATGCGAAGATG
GAATCTGAGGGGGGTGCAGATGACTCTGCTGAAGAGGGGGACTTATTAGATGATGATGATAATGAAGAACGGGGGGAAGA
CCAGCTGGAGCTGATCAAGGATGATGAAAAAGAGCCTGAGGAAGGAGAGGATGACAGAGACAGCGCCAATGGCGAGGATG
ACTCTTAA

ORF - retro_ogar_165 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.98 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE
RetrocopyMASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE
ParentalDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAV
DGR.IAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAV
RetrocopyDGRRIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAV
ParentalVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQS
VPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQAIKKEL.QIKQKVDSLLENLEKIEKEQS
RetrocopyVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQAIKKELNQIKQKVDSLLENLEKIEKEQS
ParentalKQAAVELKNEKSEEEQSSSSLKKDETNVKMESEGGADDSAEEGDLLDDDDNEERGEDQLELIKDDEKEPE
KQAAVELKNEKSEEEQSSSSLKKDETN.KMESEGGADDSAEEGDLLDDDDNEERGEDQLELIKDDEKEPE
RetrocopyKQAAVELKNEKSEEEQSSSSLKKDETNAKMESEGGADDSAEEGDLLDDDDNEERGEDQLELIKDDEKEPE
ParentalEGEDDRDSANGEDDS
EGEDDRDSANGEDDS
RetrocopyEGEDDRDSANGEDDS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_165 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 17 parental genes, and 44 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000113962 retrocopies
retro_btau_1084, retro_btau_1142,
Canis familiaris ENSCAFG000000055041 retrocopy
retro_cfam_1140,
Homo sapiens ENSG000000921992 retrocopies
retro_hsap_1624, retro_hsap_3740,
Gorilla gorilla ENSGGOG000000230151 retrocopy
retro_ggor_1046,
Microcebus murinus ENSMICG000000076822 retrocopies
retro_mmur_1439, retro_mmur_863,
Macaca mulatta ENSMMUG000000148094 retrocopies
retro_mmul_1112, retro_mmul_205, retro_mmul_468, retro_mmul_503,
Mustela putorius furoENSMPUG000000001642 retrocopies
retro_mputfur_231, retro_mputfur_241,
Mus musculus ENSMUSG000000603731 retrocopy
retro_mmus_1388,
Nomascus leucogenys ENSNLEG000000143622 retrocopies
retro_nleu_1828, retro_nleu_59,
Oryctolagus cuniculus ENSOCUG000000150291 retrocopy
retro_ocun_138,
Otolemur garnettii ENSOGAG00000012543 1 retrocopy
retro_ogar_165 ,
Pongo abelii ENSPPYG000000055936 retrocopies
retro_pabe_1116, retro_pabe_1263, retro_pabe_1342, retro_pabe_2, retro_pabe_722, retro_pabe_780,
Pan troglodytes ENSPTRG000000061182 retrocopies
retro_ptro_1089, retro_ptro_2539,
Rattus norvegicus ENSRNOG000000116211 retrocopy
retro_rnor_922,
Tupaia belangeri ENSTBEG0000001151411 retrocopies
retro_tbel_1738, retro_tbel_2114, retro_tbel_2475, retro_tbel_2838, retro_tbel_2849, retro_tbel_3094, retro_tbel_3293, retro_tbel_3776, retro_tbel_3903, retro_tbel_3937, retro_tbel_818,
Tarsius syrichta ENSTSYG000000033053 retrocopies
retro_tsyr_1004, retro_tsyr_1326, retro_tsyr_1411,
Tursiops truncatus ENSTTRG000000160552 retrocopies
retro_ttru_1299, retro_ttru_1490,


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