RetrogeneDB ID: | retro_tbel_3094 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_129946:150600..151011(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000011514 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.31 % |
Parental protein coverage: | 73.26 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVPEHPSPSPLLXX |
G...VQYVNERNA.AAV.GE.GRM...QV..INL.A.P.V..G.AGVK..AAEMYGS.PEHPS.SPLL.. | |
Retrocopy | GLLCVQYVNERNAWAAVVGEGGRMLGVQV*YINLVAKPEVS*GRAGVK*PAAEMYGSAPEHPSLSPLLSF |
Parental | XXXXXXXXXXXXXXXMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSFNSKSGQRGSSSKSGK |
.................S.PA.VP..PPI..AVV.SK.QRVSGNTS.RGKSF..KSGQR.SSS.SGK | |
Retrocopy | FFVLDYDFQLDYDDRLSSCPACVPLQPPIVHAVVFSKHQRVSGNTS*RGKSFHCKSGQRRSSSTSGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011396 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000005504 | 1 retrocopy | |
Homo sapiens | ENSG00000092199 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023015 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007682 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014809 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000000164 | 2 retrocopies | |
Mus musculus | ENSMUSG00000060373 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014362 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015029 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012543 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005593 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000006118 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011621 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011514 | 11 retrocopies | |
Tarsius syrichta | ENSTSYG00000003305 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016055 | 2 retrocopies |