RetrogeneDB ID:

retro_ogar_1702

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873562.1:5233883..5234193(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000032692
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1702
GTGATGGCAACAGGGACACCAGATTCTCAAGTGCAGTACGGTCAGTCCGTGAAGGGCTTCTCAAGGAGAAAGTGAACGTG
TGGTTCTGCCATGGTTGTGCTCATTGAGCAGGTGCTAAAGGCCCCCCGGGAGCTCTGAGCTGCCAGCTGAAGCAGCTGGA
AACGTGGCGCTACGGGAAGATGCCGTCTTGCGCTCAGAAGACAGTTTAAGGAAAACGGCAGTAGTAACAGCACGTCTTCA
GTACCAGCAAGACGTGATTCGGAAGAATGTTGAACGGTCATCAGATCTACAAGATCGGTTAGATCATCTC

ORF - retro_ogar_1702 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.9 %
Parental protein coverage: 98.11 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVMATGAPDSQARFGQSVKGLLTEKVNTCGTDVIALTKQVLKGSR-SSELLGQAARNMVLQEDAILHSEDS
VMATG.PDSQ...GQSVKG....K..TCG.....L..QVLK..R.SSEL...AA.N..L.EDA.L.SEDS
RetrocopyVMATGTPDSQVQYGQSVKGFSRRK*-TCGSAMVVLIEQVLKAPR>SSELPAEAAGNVALREDAVLRSEDS
ParentalLRKMAIITTHLQYQQEAIQKNVEQSSDLQDQLNHL
LRK.A..T..LQYQQ..I.KNVE.SSDLQD.L.HL
RetrocopyLRKTAVVTARLQYQQDVIRKNVERSSDLQDRLDHL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1702 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Loxodonta africana ENSLAFG000000206464 retrocopies
Macropus eugenii ENSMEUG000000131193 retrocopies
Otolemur garnettii ENSOGAG00000032692 1 retrocopy
retro_ogar_1702 ,



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