RetrogeneDB ID: retro_ogar_1702

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873562.1:5233883..5234193(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000032692
• Aliases: None
• Description: None

Sequence

>retro_ogar_1702
GTGATGGCAACAGGGACACCAGATTCTCAAGTGCAGTACGGTCAGTCCGTGAAGGGCTTCTCAAGGAGAAAGTGAACGTG
TGGTTCTGCCATGGTTGTGCTCATTGAGCAGGTGCTAAAGGCCCCCCGGGAGCTCTGAGCTGCCAGCTGAAGCAGCTGGA
AACGTGGCGCTACGGGAAGATGCCGTCTTGCGCTCAGAAGACAGTTTAAGGAAAACGGCAGTAGTAACAGCACGTCTTCA
GTACCAGCAAGACGTGATTCGGAAGAATGTTGAACGGTCATCAGATCTACAAGATCGGTTAGATCATCTC

Alignment

ORF - retro_ogar_1702 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.9 %
• Parental protein coverage: 98.11 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VMATGAPDSQARFGQSVKGLLTEKVNTCGTDVIALTKQVLKGSR-SSELLGQAARNMVLQEDAILHSEDS
          VMATG.PDSQ...GQSVKG....K..TCG.....L..QVLK..R.SSEL...AA.N..L.EDA.L.SEDS
Retrocopy VMATGTPDSQVQYGQSVKGFSRRK*-TCGSAMVVLIEQVLKAPR>SSELPAEAAGNVALREDAVLRSEDS

Parental  LRKMAIITTHLQYQQEAIQKNVEQSSDLQDQLNHL
          LRK.A..T..LQYQQ..I.KNVE.SSDLQD.L.HL
Retrocopy LRKTAVVTARLQYQQDVIRKNVERSSDLQDRLDHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1702 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000020646	4 retrocopies	retro_lafr_1177, retro_lafr_299, retro_lafr_608, retro_lafr_800,
Macropus eugenii	ENSMEUG00000013119	3 retrocopies	retro_meug_112, retro_meug_1350, retro_meug_231,
Otolemur garnettii	ENSOGAG00000032692	1 retrocopy	retro_ogar_1702 ,