RetrogeneDB ID: retro_meug_112

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_2915:18819..19134(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000013119
• Aliases: None
• Description: None

Sequence

>retro_meug_112
ATGGCAGAGGGGACGCCCAATCCCTAGTCTCGAGTTGGTCAGTTGGTGAAGGGGCTGCTCACAGAGAAGGTAAACGCCTG
CGGTATCAATGTGATCGCCCTCACCAAGCAGGTGCTGAAGGGCTCACGGAGCTTGGAGCTGCTGGGTCAGGCAACTCTAA
ACATGGTACTGCAGGAAGACGCCATCTTGCACTCAGAAGATAGTTTAAGGAAAATGGCAATTATAACAACTCATCTTCAC
TATCAGCAAGAAGCTATTCAGAAAAGTGTTGGACTGTCTTCCAATCTATAGGACCAGCTGAAGCATTTGCTGAAA

Alignment

ORF - retro_meug_112 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.71 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAGAPDPQSRFGQSVKGLLTEKVNACGTDVIALTKQVLKGSRSSELLGQAARNMVLQEDAILHSEDSLR
          MA.G.P.P.SR.GQ.VKGLLTEKVNACG..VIALTKQVLKGSRS.ELLGQA..NMVLQEDAILHSEDSLR
Retrocopy MAEGTPNP*SRVGQLVKGLLTEKVNACGINVIALTKQVLKGSRSLELLGQATLNMVLQEDAILHSEDSLR

Parental  KMAIITTHLQYQQEAIQKNVELSSNLQDQLKHLLK
          KMAIITTHL.YQQEAIQK.V.LSSNL.DQLKHLLK
Retrocopy KMAIITTHLHYQQEAIQKSVGLSSNL*DQLKHLLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_112 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_112 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000021622	1 retrocopy	retro_cpor_829,
Loxodonta africana	ENSLAFG00000020646	4 retrocopies	retro_lafr_1177, retro_lafr_299, retro_lafr_608, retro_lafr_800,
Macropus eugenii	ENSMEUG00000013119	3 retrocopies	retro_meug_112 , retro_meug_1350, retro_meug_231,
Otolemur garnettii	ENSOGAG00000032692	1 retrocopy	retro_ogar_1702,
Procavia capensis	ENSPCAG00000000834	1 retrocopy	retro_pcap_87,