RetrogeneDB ID:

retro_lafr_1177

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_80:5356305..5356464(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSLAFG00000020646
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_1177
CGAAACATGATACTACAGGAAGATGCCATCTTACACACAAAAGATAGTTTAAGGACAATGGCAATAATAACAACACACCT
TCAATACCAGCAAGAAGCTATTTGGAAGAATGTTGAGCAGTCATCAGCTCTACGGGACCAGTTTGATTACCTGTTGAAA

ORF - retro_lafr_1177 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.13 %
Parental protein coverage: 50.48 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRNMVLQEDAILHSEDSLRKMAIITTHLQYQQEAIQKNVEQSSDLQDQLNHLLK
RNM.LQEDAILH..DSLR.MAIITTHLQYQQEAI.KNVEQSS.L.DQ...LLK
RetrocopyRNMILQEDAILHTKDSLRTMAIITTHLQYQQEAIWKNVEQSSALRDQFDYLLK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_1177 was not experimentally validated.

Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000216221 retrocopy
Loxodonta africana ENSLAFG00000020646 4 retrocopies
Macropus eugenii ENSMEUG000000131193 retrocopies
Otolemur garnettii ENSOGAG000000326921 retrocopy
Procavia capensis ENSPCAG000000008341 retrocopy



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