RetrogeneDB ID: retro_ogar_2843

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873671.1:828153..829057(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZRANB2
• Ensembl ID: ENSOGAG00000000485
• Aliases: None
• Description: zinc finger, RAN-binding domain containing 2 [Source:HGNC Symbol;Acc:13058]

Sequence

>retro_ogar_2843
TCCACCAAGAACTTCTGAGTCAGTGAGGGGGACTGGATTTGCCTTGACAAGAAATGTGGAAATGTAAACAGTGCTAGAAG
AACTAGCTGTAACTGATGTGGTGGGGAGAAAACAACTGAGGCCAAGATGATGAAAGCTGGGGGCACTGAAATAGGAAAGA
CACTTGCAGAAGAGAGCCAAGGCCTTTTTCGTGCTAATGACTGGCAGTGTAAGACTTGCAGTAATGTGAATTGGGCCAGA
AGATCAGAGTGTAACATGTATCATACTCCAAATTATGCTAAATTAGAAGAAAGAACAGGATATGGTGGTGGTTTTAATGA
AAGAGAAAATGTTGAACATATAGAAAGAGAAGAATCTAATGGTGAATATGAGTTTGGACGTAAAAAGAAAAAGGACAGAG
AGAAGGCAGTTGGTCCTGCATCTATATTGAAGGAATTTGAAGATGAAGAATCAGAGGGAGAAGACGAGGATGAGGATGAA
GATCTTTCTAAATATAAATTAGATGACGATGAAGATGATACTGATCTCTCAAAATATAATCTTGATGCCAGTGAAGAAGA
TAGTAATAAAAAGAAATCTAATAGACGAAGTCGCTCAAAGTCTTGACCTTCAAATTCACGATCTTTATCATGCTCATCCT
TCCCCCCAAGTTCAAGGTCTAGGTCCAGGTCCTGTTCAAGAAGTTCTTCCAGTTTGCAGTCAAGTTCTCGTTCCAGTTCC
AGAGAATGTTCGAGATCTTGTGGGTAGAAATCAAGATCCAGCTCCAGGTCCACAGGGGCTCCTCTTCCCCATGAAGAAGA
TCTTACTCAAGTTCATCATCTTCTCCTGAGAGGAACAGAAAGAGAAGAGATCTTCTTCATCTGGTGATTGCAAAAAAAGA
CGAACTAGATCACAGTCACCTGAA

Alignment

ORF - retro_ogar_2843 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.52 %
• Parental protein coverage: 93.33 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  STKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQC
          STKNF.VS.GDWIC.DKKCGNVN.ARRTSCN.CG.EKTTEAKMMKAGGTEIGKTLAE.S.GLF.ANDWQC
Retrocopy STKNF*VSEGDWICLDKKCGNVNSARRTSCN*CGGEKTTEAKMMKAGGTEIGKTLAEESQGLFRANDWQC

Parental  KTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGP
          KTCSNVNWARRSECNM..TP.YAKLEERTGYGGGFNERENVE.IEREES.GEY.EFGRKKKK.R.KAVGP
Retrocopy KTCSNVNWARRSECNMYHTPNYAKLEERTGYGGGFNERENVEHIEREESNGEY-EFGRKKKKDREKAVGP

Parental  ASILKEVEDKESEGEDEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSHKKKSNRRSRSKSRSSHS
          ASILKE.ED.ESEGEDEDEDEDLSKYKL..D.DEDD.DLSKYNLDAS.EEDS.KKKSNRRSRSKS..S.S
Retrocopy ASILKEFEDEESEGEDEDEDEDLSKYKL--DDDEDDTDLSKYNLDAS-EEDSNKKKSNRRSRSKS*PSNS

Parental  RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS-HRGSSSPRKRSYSSSSSS
          RS.S.SS.P.SSRSRSRS.SRSSSS.QS.SRSSSRE.SRS.G.KSRSSSRS.HRGSSSP..RSYSSSSSS
Retrocopy RSLSCSSFPPSSRSRSRSCSRSSSSLQSSSRSSSRECSRSCG*KSRSSSRS<HRGSSSP*RRSYSSSSSS

Parental  PERNRKR-SRSRSSSSGDRKKRRTRSRSPE
          PERNRKR..RS.S..SGD.KKRRTRS.SPE
Retrocopy PERNRKR<KRSSS--SGDCKKRRTRSQSPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2843 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006356	2 retrocopies	retro_cjac_2350, retro_cjac_4199,
Monodelphis domestica	ENSMODG00000000504	2 retrocopies	retro_mdom_1975, retro_mdom_443,
Oryctolagus cuniculus	ENSOCUG00000004640	2 retrocopies	retro_ocun_1170, retro_ocun_776,
Otolemur garnettii	ENSOGAG00000000485	4 retrocopies	retro_ogar_1274, retro_ogar_1841, retro_ogar_2843 , retro_ogar_976,
Pan troglodytes	ENSPTRG00000000856	1 retrocopy	retro_ptro_3251,