RetrogeneDB ID: retro_ogar_976

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873532.1:21347685..21348476(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZRANB2
• Ensembl ID: ENSOGAG00000000485
• Aliases: None
• Description: zinc finger, RAN-binding domain containing 2 [Source:HGNC Symbol;Acc:13058]

Sequence

>retro_ogar_976
AATGACTGGCAGTGTAAGACTTGCAGTAATGTGAATTGGGCCAGAAGATCAGAGTGTAACATGTGTAATACTCCAAAGTA
TGCCAAATTAGAAGAAAGATCAGGATATGGTGGTGGTTTAATGAAAGAGAAAATGTTGAATATATAGAAAGAGAAGAACC
TGATGGTGAATATGATGAGTTTGGTCGTAAAAAGAAAAAGTACAAAGGGAAGGCAGTTGGTCCTGCATCTATATTGAAAG
AAGTTGAAGATAAAGAATCAGAGGGAGAAGATGAGGATGAGGATGAAGATCTTTCTAAATATAAATTAGATGAGGATGAG
GATGAAGATGATGCTGATCTCTCAAAATATAATCTTGATGAAGATTATAAGTAAAGAAGAAGATAGTCATGAAAAGAAAT
CTAATAGATGAAGTCGCTTAAAGTCTCAATCTTCACATTCACGATCTTCATCACACTCATCCTCCTCCTCAAGTTCAAGG
TCTAGGTCCAGATCCCGTTCAAGAAGTTCTTGCAGTTCACACTCAAGATCTCATTCCAGTTCCAGAGAATGTTCAAAATC
TCATGGGTTGAAATCAAGATCCAGCTCCAAGTCCCACAGGGGCCCCTCTTCTCCATGAAAAAGATCTTACTCAAGTTGAT
CATCTTCTGAGAGGAACAAAAAAGAAGACGTTCTAGATCTTCTTCATCTGGTGATCACAAAAAAAGACGAACAAGATCAC
AGTCACCCAAAAGGTGCCACAGGTCATCTTCTGGATCATCCCATTCTGGTTCCCGTTCAAGTTCAAAAAAG

Alignment

ORF - retro_ogar_976 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.1 %
• Parental protein coverage: 79.7 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  NDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG-FNERENVEYIEREESDGEYDEFGRKKKKYR
          NDWQCKTCSNVNWARRSECNMCNTPKYAKLEER.GYGGG.FNERENVEYIEREE.DGEYDEFGRKKKKY.
Retrocopy NDWQCKTCSNVNWARRSECNMCNTPKYAKLEERSGYGGG<FNERENVEYIEREEPDGEYDEFGRKKKKYK

Parental  GKAVGPASILKEVEDKESEGEDEDEDEDLSKYKLDED--EDEDDADLSKYNLD-ASEEEDSHKKKSNRRS
          GKAVGPASILKEVEDKESEGEDEDEDEDLSKYKLDED..ED..D........D..S.EEDSH.KKSNR.S
Retrocopy GKAVGPASILKEVEDKESEGEDEDEDEDLSKYKLDEDEDEDDADLSKYNLDED>ISKEEDSHEKKSNR*S

Parental  RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR
          R.KS.SSHSRSSS.SSS.SSSRSRSRSRSRSS.SS.SRS.SSSRE.S.S.G.KSRSSS.SHRG.SSP.KR
Retrocopy RLKSQSSHSRSSSHSSSSSSSRSRSRSRSRSSCSSHSRSHSSSRECSKSHGLKSRSSSKSHRGPSSP*KR

Parental  SYSSSSSSPERNR-KRSRSRSSSSGDRKKRRTRSRSPERYAELSSQGNHRNLRASNNK
          SYSS.SSS.ERN..KR.RSRSSSSGD.KKRRTRS.SP.R....SS...H...R.S..K
Retrocopy SYSS*SSS-ERNK<KRRRSRSSSSGDHKKRRTRSQSPKRCHRSSSGSSHSGSRSSSKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_976 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006356	2 retrocopies	retro_cjac_2350, retro_cjac_4199,
Monodelphis domestica	ENSMODG00000000504	2 retrocopies	retro_mdom_1975, retro_mdom_443,
Oryctolagus cuniculus	ENSOCUG00000004640	2 retrocopies	retro_ocun_1170, retro_ocun_776,
Otolemur garnettii	ENSOGAG00000000485	4 retrocopies	retro_ogar_1274, retro_ogar_1841, retro_ogar_2843, retro_ogar_976 ,
Pan troglodytes	ENSPTRG00000000856	1 retrocopy	retro_ptro_3251,