RetrogeneDB ID: | retro_ogar_2956 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873689.1:2788872..2789588(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TYMS | ||
Ensembl ID: | ENSOGAG00000024349 | ||
Aliases: | None | ||
Description: | thymidylate synthetase [Source:HGNC Symbol;Acc:12441] |
Percent Identity: | 69.35 % |
Parental protein coverage: | 77. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 7 |
Parental | GTLSVFGMQARY-SLRDEFPLLTTKRV-FWKGVLE-ELLWFIKGSTNAKELSSKGVKIWDANGSRDF-LD |
G...V.G.Q....S.R.EFPL.T.K.V..WKGVLE.ELL.FIKGSTNAKELSSKGVK.W.AN.S..F.LD | |
Retrocopy | GAGQVLGVQSAA<SPRGEFPLRTSKCV<VWKGVLE<ELL*FIKGSTNAKELSSKGVKLWSANASQAF<LD |
Parental | SLGFSKREEGDLGPVYGFQWRHFGAEYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNP-KDLP |
.L.FS.RE.GDLGPV.GF.WRHFGA.YKDMDSD.SGQG.D.LQK...TI.TNPDDRRII.CA.N..KD.P | |
Retrocopy | RLRFSNREKGDLGPVSGFPWRHFGAQYKDMDSDHSGQGADRLQKLTETIRTNPDDRRIITCAYNS<KDPP |
Parental | LMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYSLLTYMIAHITGLKPGDFVHTLGDAHI- |
.MALPPC.ALCQF.VV.GEL.CQL.Q.SGDMGLGV.FN.AS.SL.T.M..H..G.KPGDFVHTLGDA.I. | |
Retrocopy | PMALPPCQALCQFFVVTGELCCQLHQWSGDMGLGVRFNMASHSLVTCMMVHSAGPKPGDFVHTLGDARI< |
Parental | YLNHVEPLKIQLQREPRPFPKLKILRKVETI-DDFKAE |
.LNH.E.L.IQL..EPRPF.KL.IL.KV....DDFKA. | |
Retrocopy | FLNHIELLNIQL*IEPRPFLKLEILLKVGQM<DDFKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000009230 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014910 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000009507 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021479 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005419 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025747 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024349 | 2 retrocopies |
retro_ogar_2956 , retro_ogar_3211,
|
Sarcophilus harrisii | ENSSHAG00000003102 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023869 | 2 retrocopies |