RetrogeneDB ID: | retro_sscr_841 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:57092661..57092986(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TYMS | ||
Ensembl ID: | ENSSSCG00000023869 | ||
Aliases: | None | ||
Description: | thymidylate synthetase [Source:HGNC Symbol;Acc:12441] |
Percent Identity: | 76.58 % |
Parental protein coverage: | 66.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPG-DFVHTLGDAHIYLNHIEPLKIQLQR |
..N.ELS.QLYQ.SGDMGLGV.FNIASY.LLTYMI.HITGLKP..DF.HT.G.A.I.LN.IEPLKI.LQ. | |
Retrocopy | LLNRELSYQLYQESGDMGLGVHFNIASYPLLTYMIPHITGLKP*<DFEHTSGHARIGLNRIEPLKIELQ* |
Parental | EPRPFPKLKILRKVEKIDDFKAEDFQIEGYN-PHPTIKMEM |
.PRPFPKLKIL.KVEKI.DFK.EDF.IEGYN.P.PTIK.EM | |
Retrocopy | GPRPFPKLKIL*KVEKINDFKTEDFYIEGYN<PYPTIKIEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .46 RPM |
SRP014902_testis | 0 .00 RPM | 9 .48 RPM |
SRP018288_heart | 0 .00 RPM | 1 .07 RPM |
SRP018288_kidney | 0 .00 RPM | 0 .99 RPM |
SRP018288_liver | 0 .00 RPM | 1 .92 RPM |
SRP018288_lung | 0 .00 RPM | 2 .95 RPM |
SRP018856_adipose | 0 .00 RPM | 0 .68 RPM |
SRP035408_brain | 0 .00 RPM | 0 .25 RPM |
SRP035408_liver | 0 .00 RPM | 2 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Loxodonta africana | ENSLAFG00000014910 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000009507 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021479 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025747 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024349 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000003102 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023869 | 2 retrocopies |
retro_sscr_810, retro_sscr_841 ,
|