RetrogeneDB ID: | retro_ogar_3211 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873742.1:1612243..1613162(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TYMS | ||
Ensembl ID: | ENSOGAG00000024349 | ||
Aliases: | None | ||
Description: | thymidylate synthetase [Source:HGNC Symbol;Acc:12441] |
Percent Identity: | 90.61 % |
Parental protein coverage: | 98.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ELPRPPSPPPAQERGAESQPPHGELQYLGQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDEFPLLTT |
ELPRPPSP.PAQE.GAE.QP.HGELQYLGQIEHILRC.FRKDDRT.TGTLSVFGMQARYS..DEFPLLTT | |
Retrocopy | ELPRPPSPSPAQEQGAEPQPAHGELQYLGQIEHILRCSFRKDDRTDTGTLSVFGMQARYSRKDEFPLLTT |
Parental | KRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSKREEGDLGPVYGFQWRHFGAEY |
K.VFWKGVLEELLWFIKGST.AKELSSKGVKIWDANG.RDFLDSLG.SKREEGD.G.VYGFQWRHFGAEY | |
Retrocopy | KCVFWKGVLEELLWFIKGSTKAKELSSKGVKIWDANGHRDFLDSLGLSKREEGDFGLVYGFQWRHFGAEY |
Parental | KDMDSDYSGQGVD-QLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSC-QLYQ |
KDMDSDYSGQGV..QLQKVIDTIKTNPDDRRIIM.AWNPKDLPLM.LPPCHA.CQFYVVNGEL...QLYQ | |
Retrocopy | KDMDSDYSGQGVT<QLQKVIDTIKTNPDDRRIIMRAWNPKDLPLMTLPPCHAFCQFYVVNGELTA<QLYQ |
Parental | RSGDMGLGVPFNIASYSLLTYMIAHITGLKPGDFVHTLGDAHIYLNHVEPLKIQLQREPRPFPKLKILRK |
.SGD.GLGVPFNIASYSLLTY.I.HITGLKPGDFVHTLGDAHIYLNHVEPLKIQLQREPRPFPKLKIL.K | |
Retrocopy | QSGDTGLGVPFNIASYSLLTYKITHITGLKPGDFVHTLGDAHIYLNHVEPLKIQLQREPRPFPKLKIL*K |
Parental | VETIDDFKAEDFKIEGYNPHPTIKMEMAV |
VETIDDFKAEDFKIEGYN.HPTIKMEMA. | |
Retrocopy | VETIDDFKAEDFKIEGYNQHPTIKMEMAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000009230 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014910 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000009507 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021479 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005419 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025747 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024349 | 2 retrocopies |
retro_ogar_2956, retro_ogar_3211 ,
|
Sarcophilus harrisii | ENSSHAG00000003102 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023869 | 2 retrocopies |