RetrogeneDB ID: retro_ogar_3201

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873740.1:1143220..1144643(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BTBD10
• Ensembl ID: ENSOGAG00000000739
• Aliases: None
• Description: BTB (POZ) domain containing 10 [Source:HGNC Symbol;Acc:21445]

Sequence

>retro_ogar_3201
ATGGCAAGACAGCCTCATCCCTATGACAGTAACTCCGGTGATCCAGAGAATTGGGATCGGAAATTGCATAGTAGACCTCA
TAAACTTTATAAACATTCAAGTACTCCCTCACGTGTTGCTAAAGGAGGAGTCGACCATACCAAAATGAGTCTACATGGTG
CTAGTGGGGGGCATGAGAGATCAAGAGATAGACGAAGGTCAAGTGACAGATCGCGAGATTCATCTCGTGAAAGAACAGAA
TCTCAACTCACTCCTTGTATCAGGAATGTTACTTCTCCAACATGACAGCATCATGTTAAAGGAGAAAAAGATCACAGTTC
CTCTTGTCCAAGTAGTCCTCGTCCTCAGAAAGCATCCCCAAATAGTTCCATTAGCAGTGTTGGGAACAGCAGCAGAAACA
GTAGTCAGTCAAGTTCAGATGGTAGCTGTAAGGCATCTGGGGAAATGGTGTTTGTATGTGAAAATGCAAAAGAAGGAGCT
CGGAATGTCAGAACCTCAGAACGAGTGACACTAATAGTGGATAACACTAGATTTGTTGTAGACCCATCTATTTTTACTGC
ACAGCCAAATACAATGTTGGACAGGATGTTTGGGTCTGGCCAAGAACATAACTTTACATGTTCCAGTGAGAAGGGAGAGT
ATGAAGTGGCAGAGGGAATTGGTTCCGCTGTGTTTTGAGCTATTCTGGATTACTATGAGACAGGAATAATCCGTTGTCCT
GATGGCATATCTATTCCTGAACTGAGAGAAGCATGTGACTATCTTTGTATCTCTTTTGAATATAGTACTATTAAATGTAG
AGATCTCAGTGCCCTAATGTATGCGTTATCGAATGATGGTGCTCGTAGACAATTTGAATTTTATCTGGAAGAAATGATCC
TCCCTCTCATGGTAGCTAGTGCCCAGAGTGGGGAACGAGAATGCCATATAGTGGTGCTTACAGATGATGATGGGTTGATT
GGGATGAAGAATATCCACCACAGATGGGAGAAGAATATTCACAAATTATTTATAGCACAAAATTATATAGATTTTTCAAA
TACATTGAAAACAGAGATGTGGCCAAATTAGTTTTAAAGGAGAGGGGTCTTAAGAAGATTAGATTGGAAATAGAAGGTTA
TCCTACCTCTAAAGAAAAAGTAAAGAAAAAGCCTGGAGGCCGCCCAGAAGTGATTTACAACTGTGTTCAAAGACCCTTTA
TTCAAATGTCCTGGGAAAAGGAAGAAGGAAAGAGTCGGCATGTAGACTTTCAGTGTGTTAAGAGTAAACCCATCACCAAC
CTTGCAGCAGCTGCTGCAGACATTCCCCAAGACCAGCTGGTAGTCATGCATCCAGCCCTCAAGTGGACGAACTGGATGTT
CTCCCCATGCATCCCCCATCTGGCAACAACGACCTCGATCCTGATGCACAGAATCCAATGCTG

Alignment

ORF - retro_ogar_3201 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.66 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAGRPHPYDSNSSDPENWDRKLHSRPRKLYKHSSTPSRVAKGGVDHTKMSLHGASGGHERSRDRRRSSDR
          MA..PHPYDSNS.DPENWDRKLHSRP.KLYKHSSTPSRVAKGGVDHTKMSLHGASGGHERSRDRRRSSDR
Retrocopy MARQPHPYDSNSGDPENWDRKLHSRPHKLYKHSSTPSRVAKGGVDHTKMSLHGASGGHERSRDRRRSSDR

Parental  SRDSSHERTESQLTPCIRNVTSPTRQHHVEREKDHSSSRPSSPRPQKASPNGSISSAGNSSRNSSQSSSD
          SRDSS.ERTESQLTPCIRNVTSPT.QHHV..EKDHSSS.PSSPRPQKASPN.SISS.GNSSRNSSQSSSD
Retrocopy SRDSSRERTESQLTPCIRNVTSPT*QHHVKGEKDHSSSCPSSPRPQKASPNSSISSVGNSSRNSSQSSSD

Parental  GSCKTSGEMVFVYENAKEGARNVRTSERVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNE
          GSCK.SGEMVFV.ENAKEGARNVRTSERVTLIVDNTRFVVDPSIFTAQPNTML.RMFGSG.EHNFT...E
Retrocopy GSCKASGEMVFVCENAKEGARNVRTSERVTLIVDNTRFVVDPSIFTAQPNTMLDRMFGSGQEHNFTCSSE

Parental  KGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDG
          KGEYEVAEGIGS.VF.AILDYY.TGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALM..LSNDG
Retrocopy KGEYEVAEGIGSAVF*AILDYYETGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMYALSNDG

Parental  ARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDD-VVDWDEEYPPQMGEEYSQIIYSTKLYRFFKYI
          ARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDD..VDWDEEYPPQMGEEYSQIIYSTKLYRFFKYI
Retrocopy ARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDD<WVDWDEEYPPQMGEEYSQIIYSTKLYRFFKYI

Parental  ENRDVAKSVLKERGLKKIRLGIEGYPTYKEKVKKRPGGRPEVIYNYVQRPFIRMSWEKEEGKSRHVDFQC
          ENRDVAK.VLKERGLKKIRL.IEGYPT.KEKVKK.PGGRPEVIYN.VQRPFI.MSWEKEEGKSRHVDFQC
Retrocopy ENRDVAKLVLKERGLKKIRLEIEGYPTSKEKVKKKPGGRPEVIYNCVQRPFIQMSWEKEEGKSRHVDFQC

Parental  VKSKSITNLAAAAADIPQDQLVVMHP-TPQVDELDILPMHPPSGNNDLDPDAQNPML
          VKSK.ITNLAAAAADIPQDQLVVMHP..PQVDELD.LPMHPPSGNNDLDPDAQNPML
Retrocopy VKSKPITNLAAAAADIPQDQLVVMHP<SPQVDELDVLPMHPPSGNNDLDPDAQNPML

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3201 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000024984	1 retrocopy	retro_cpor_137,
Monodelphis domestica	ENSMODG00000008728	1 retrocopy	retro_mdom_1020,
Mus musculus	ENSMUSG00000038187	1 retrocopy	retro_mmus_3560,
Nomascus leucogenys	ENSNLEG00000017691	1 retrocopy	retro_nleu_232,
Otolemur garnettii	ENSOGAG00000000739	1 retrocopy	retro_ogar_3201 ,
Pan troglodytes	ENSPTRG00000003377	1 retrocopy	retro_ptro_753,
Rattus norvegicus	ENSRNOG00000014341	2 retrocopies	retro_rnor_2220, retro_rnor_2872,
Sorex araneus	ENSSARG00000000266	1 retrocopy	retro_sara_405,
Sus scrofa	ENSSSCG00000013395	2 retrocopies	retro_sscr_639, retro_sscr_640,
Tarsius syrichta	ENSTSYG00000000445	2 retrocopies	retro_tsyr_196, retro_tsyr_367,
Tursiops truncatus	ENSTTRG00000013943	1 retrocopy	retro_ttru_897,