RetrogeneDB ID: retro_ttru_897

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_542:601386..602198(-)
• Located in intron of: ENSTTRG00000008310

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BTBD10
• Ensembl ID: ENSTTRG00000013943
• Aliases: None
• Description: BTB (POZ) domain containing 10 [Source:HGNC Symbol;Acc:21445]

Sequence

>retro_ttru_897
ACATGTCCCAGCGAGAAGGGAGAGTATGAGGTGGCAGAGGGGATTGGCTCTACTGTGTTTCGAGCTATTCTGGATTACTA
TAAAACAGGAATAATCCATTGTCCCAATGGCATATCTATTCCTGAACTGAGGGAACCATGCGACTCTCTTTGTATCTCTT
TTGAATATAGTACTATTAAATGTAGAGATCTCAGTGCCCTAATGCATGAGTTATCAAATGATGGTGCCCGTAGACAGTTC
GAATTTTACCTGAAAGAAATGACTCTGCCTCTCATGGTAGCAAGTGCCCAGAGTGGGGACCATGAATGCCACATAGTGGT
GCTTACAGGTGATGATGTGGTTGATTGGGATGAAGAGTATCCACCACAGATGGGAGAATAATATTCACAAATTATTTATA
GCACAAAATTATATAGATTTTTCAAGTACATTGAAAACAGAGTTGTGGCCAAATCAGTTTTGATGGAGAGGGGTCTTAAG
AAGACTAGATTGGGAATAAAAGGTTGTCCAACCTACAAAGAAAAAAGTAAAAGAAAAGGCCTGGGGGCTGCCCAGAAGTG
ATTTACAACTATGTCCAAAGACCCTTTATTCGAATGTTTTGGGAGAAGGAAGAAGGAAAGAGCCGGTGTGTAGACTTTCA
GTGTGTAAAAAGTAAATCTATCACCAACCTTGCAGCAGCTGCAGCTGACATTCCCCAGGACCAGCTGGTAGTCATGCACC
CAACTCCTCAAGTGGATGAGCTCGATATTTTCCCTATCCATCCCCCTTCTAGCAACAATGACCTCGATCCTGACGCACAG
AATCTGATGCTG

Alignment

ORF - retro_ttru_897 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.71 %
• Parental protein coverage: 56.84 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  TRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHE
          T.P.EKGEYEVAEGIGSTVFRAILDYYKTGII.CP.GISIPELRE.CD.LCISFEYSTIKCRDLSALMHE
Retrocopy TCPSEKGEYEVAEGIGSTVFRAILDYYKTGIIHCPNGISIPELREPCDSLCISFEYSTIKCRDLSALMHE

Parental  LSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQIIYSTKLYRF
          LSNDGARRQFEFYL.EM.LPLMVASAQSG..ECHIVVLT.DDVVDWDEEYPPQMGE.YSQIIYSTKLYRF
Retrocopy LSNDGARRQFEFYLKEMTLPLMVASAQSGDHECHIVVLTGDDVVDWDEEYPPQMGE*YSQIIYSTKLYRF

Parental  FKYIENRDVAKSVLKERGLKKIRLGIEGYPTYKE-KVKKRPGGRP-EVIYNYVQRPFIRMSWEKEEGKSR
          FKYIENR.VAKSVL.ERGLKK.RLGI.G.PTYKE.KVK....G.P.EVIYNYVQRPFIRM.WEKEEGKSR
Retrocopy FKYIENRVVAKSVLMERGLKKTRLGIKGCPTYKE>KVKEKAWGLP>EVIYNYVQRPFIRMFWEKEEGKSR

Parental  HVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDILPIHPPSSNNDLDPDAQNPML
          .VDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDI.PIHPPSSNNDLDPDAQN.ML
Retrocopy CVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDIFPIHPPSSNNDLDPDAQNLML

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_897 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_897 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000024984	1 retrocopy	retro_cpor_137,
Monodelphis domestica	ENSMODG00000008728	1 retrocopy	retro_mdom_1020,
Mus musculus	ENSMUSG00000038187	1 retrocopy	retro_mmus_3560,
Nomascus leucogenys	ENSNLEG00000017691	1 retrocopy	retro_nleu_232,
Otolemur garnettii	ENSOGAG00000000739	1 retrocopy	retro_ogar_3201,
Pan troglodytes	ENSPTRG00000003377	1 retrocopy	retro_ptro_753,
Rattus norvegicus	ENSRNOG00000014341	2 retrocopies	retro_rnor_2220, retro_rnor_2872,
Sorex araneus	ENSSARG00000000266	1 retrocopy	retro_sara_405,
Sus scrofa	ENSSSCG00000013395	2 retrocopies	retro_sscr_639, retro_sscr_640,
Tarsius syrichta	ENSTSYG00000000445	2 retrocopies	retro_tsyr_196, retro_tsyr_367,
Tursiops truncatus	ENSTTRG00000013943	1 retrocopy	retro_ttru_897 ,