RetrogeneDB ID: | retro_omer_17 | ||
Retrocopylocation | Organism: | Oryza meridionalis | |
Coordinates: | 1:9214786..9216157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OMERI01G10410 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OMERI02G30980 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.64 % |
Parental protein coverage: | 93.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ARLVTRAAASSPKLPSGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKLDNCKPCGGAIPLCMVSEF |
ARLV.....S....P..R.LRVAVVGGGPAG..AAEALA..G....L.ER.....KPCGGAIPLCM..EF | |
Retrocopy | ARLVVSCSSSATPAPPRRQLRVAVVGGGPAGASAAEALASAGAQAFLLERNPSGAKPCGGAIPLCMLDEF |
Parental | DLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAP |
..P.DLVDR.V..M...SPSN.A.D....L.P...I.M.RREVLD..LR.RA..AGA..V.GL......P | |
Retrocopy | AIPRDLVDRRVTRMRVLSPSNLAADFSRALPPGAHIPMLRREVLDSFLRRRAADAGATLVPGLVTSLSLP |
Parental | KEP-NGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAKDMGAGDYEYAIAFQERVKIPDDKM |
..P....Y.VHY...DS..G.........EVDA..GADGANSRVA...GAGDY..AIAFQER...PD..M | |
Retrocopy | ADPATDPYLVHYISSDS--GGPSSSRCVLEVDAVIGADGANSRVAREVGAGDYSTAIAFQERIRLPDEAM |
Parental | KYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHP |
.YY...AEMYVG.DVSPDFYGWVFPKCDHVAVGTGTV..KP.IK..Q...R.RA.....GG...RVEAHP | |
Retrocopy | AYYDDLAEMYVGGDVSPDFYGWVFPKCDHVAVGTGTVAAKPEIKRLQSGIRARAAGKVAGGRVVRVEAHP |
Parental | IPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRR-YLAEF |
IPEHPRP.RV.GRV.LVGDAAGYVT.CSGEGIYFAA.SGR.C..A..A.....T..V.E...R..YL... | |
Retrocopy | IPEHPRPRRVVGRVALVGDAAGYVTRCSGEGIYFAARSGRLCGRA-MADEWGLTGAVTEAGIRSGYLRRW |
Parental | DRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLV |
D....PT...LD.LQ.VFY..NA.REA.VEMCAD..VQR.TFDSYL.KR..P..P..D..L...T....V | |
Retrocopy | DDEFRPTFRFLDLLQRVFYGGNAGREALVEMCADEHVQRRTFDSYLHKRMAPAEPWGDLRLLWRTAAAMV |
Parental | RATALRREMEKV |
R...L.RE.E.. | |
Retrocopy | RCGVLGREVERL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI3G59430 | 1 retrocopy | |
Zea mays | GRMZM2G105644 | 1 retrocopy | |
Oryza meridionalis | OMERI02G30980 | 1 retrocopy |
retro_omer_17 ,
|
Oryza nivara | ONIVA06G04710 | 1 retrocopy | |
Oryza punctata | OPUNC02G29860 | 1 retrocopy | |
Oryza rufipogon | ORUFI02G34000 | 1 retrocopy | |
Oryza sativa japonica | OS02G0744900 | 1 retrocopy | |
Sorghum bicolor | Sb04g028050 | 1 retrocopy | |
Triticum aestivum | Traes_6DL_0FF72D765 | 1 retrocopy |