Parental gene:

CHLP, OS02G0744900

Aliases:None
Description:Geranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6Z2T6]
Organism:Rice subsp. japonica (Oryza sativa japonica)
Coordinates:2:31246224..31248801(+)


>OS02G0744900
ATGACCTCGCTGTCGTCCTCCGCCGCCGCGGCGCGCGCCACCTTCGTCATGCCGTCGTCGGTTCGTGGGGGCATGAGCCG
CGGCAGGAGGATGGCGAGGCTGGTGACGCGCGCGGCGGCGTCGAGCCCGAAGCTCCCGAGCGGGCGGCGGCTGCGGGTGG
CGGTGGTCGGAGGCGGACCCGCGGGCGGCGCGGCGGCGGAGGCGCTGGCCAAGGGCGGCGTGGAGACGGTGCTCATCGAA
CGGAAGCTGGACAACTGCAAGCCCTGCGGCGGGGCCATCCCGCTGTGCATGGTGTCGGAGTTCGACCTGCCGCTGGACCT
CGTCGACAGGAAGGTGAGGAAGATGAAGATGATTTCGCCGTCCAACGTCGCCGTCGACATCGGCGGCACGCTCGCGCCGC
ACGAGTACATCGGCATGGTCCGCCGCGAGGTGCTCGACGCCTACCTCCGCTCCCGCGCCGAGGGGGCCGGCGCCGAGGTC
GTCAATGGTCTCTTCCTGAGGTATGAGGCGCCCAAGGAACCCAACGGGTCGTACGTGGTGCACTACAACCACTACGACAG
CTCCAACGGCAAGGCCGGCGGCGAGAAGCGGACGTTCGAGGTGGACGCGATCGTGGGCGCGGACGGCGCCAACTCCCGCG
TCGCCAAGGACATGGGCGCCGGCGACTACGAGTACGCCATCGCGTTCCAGGAGCGCGTCAAGATCCCCGACGACAAGATG
AAGTACTACGAGGAGCGCGCCGAGATGTACGTCGGCGACGACGTCTCGCCGGACTTCTACGGCTGGGTGTTCCCCAAGTG
CGACCACGTCGCCGTCGGCACCGGCACCGTCACCCACAAGCCCGACATCAAGAAGTTCCAGGCCGCCACCCGCCTTCGCG
CCAAGGACCGGATCGAGGGCGGCAAGATCATCCGCGTCGAGGCTCACCCCATCCCCGAGCACCCGAGGCCTAAGAGGGTG
GCGGGGAGGGTGACGCTGGTGGGGGACGCGGCGGGGTACGTGACAAAGTGCTCCGGCGAGGGGATCTACTTCGCGGCGAA
GAGCGGGCGGATGTGCGCGGAGGCGATCGTGGCCGGGTCGGCGAACGGGACGCGGATGGTGGAGGAGAGCGACCTGCGCA
GGTACCTGGCCGAGTTCGACCGCCTCTACTGGCCGACGTACAAGGTGCTCGACGTGCTCCAGAAGGTGTTCTACCGCTCC
AACGCCGCCCGCGAGGCGTTCGTCGAGATGTGCGCCGACGACTACGTCCAGAGGATGACCTTCGACAGCTACCTCTACAA
GCGCGTCGTGCCGGGCAACCCGCTCGACGACATCAAGCTCGCCGTCAACACCATCGGCAGCCTCGTCCGCGCCACCGCCC
TCCGCCGCGAGATGGAGAAGGTCACCTTGTGA

Species Parental gene accession Homology type Retrogenes number
Brachypodium distachyon BRADI3G59430 ortholog_one2one 1 retrogene
retro_bdis_46,
Zea mays GRMZM2G105644 ortholog_one2one 1 retrogene
retro_zmay_29,
Oryza meridionalis OMERI02G30980 ortholog_one2one 1 retrogene
retro_omer_17,
Oryza nivara ONIVA06G04710 ortholog_one2one 1 retrogene
retro_oniv_24,
Oryza punctata OPUNC02G29860 ortholog_one2one 1 retrogene
retro_opun_22,
Oryza rufipogon ORUFI02G34000 ortholog_one2one 1 retrogene
retro_oruf_42,
Sorghum bicolor Sb04g028050 ortholog_one2one 1 retrogene
retro_sbic_27,
Triticum aestivum Traes_6DL_0FF72D765 ortholog_one2one 1 retrogene
retro_taes_28,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_osat_44 57.64 92.87
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Download FASTA sequences of all OS02G0744900 retrocopies