RetrogeneDB ID: | retro_pabe_2672 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:100132391..100133589(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSPPYG00000008142 | ||
Aliases: | None | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 80.34 % |
Parental protein coverage: | 91.63 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | LREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTA |
L.EA.RQIKE.A.QT.DVLKQHFNDLKGTL..LLDERLVTL.QEVD..EQETIKPLDDCQ.LIEHGVNTA | |
Retrocopy | LWEAQRQIKECAPQTKDVLKQHFNDLKGTLEELLDERLVTL*QEVDIVEQETIKPLDDCQRLIEHGVNTA |
Parental | EDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGT |
EDLV..GEIAM.G.V.EENE...SFTKK.SHIQLDSLPEVPLLVDV.CLSAQLDDSIL.IVKD.I.KHGT | |
Retrocopy | EDLV*VGEIAMVGSV-EENEQQYSFTKKVSHIQLDSLPEVPLLVDVLCLSAQLDDSIL-IVKDYISKHGT |
Parental | VASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQ |
VAS.PPVQI.ELI.KPG.I.V.WCKVDDDFTAQDYRL.F.KCTSNH.EDV.VGSET.FIVLH.D.NVDYQ | |
Retrocopy | VASLPPVQI*ELIQKPGVITVGWCKVDDDFTAQDYRL*FCKCTSNHYEDVHVGSETQFIVLHMDSNVDYQ |
Parental | FRVCARGDGRQEWS-PWSVPQIGHSTLVPHEWTAGFEGYSL-SSRRNIALRNDSESSGVLYSRAPTYFCG |
F.VC..GDG.QE.S.P.SVPQIGH.TL.PHEWTAGFEGYSL..SR.NIA..NDS.SSGVLYSR.PTYFCG | |
Retrocopy | FNVCT*GDGQQECS<PRSVPQIGHFTLMPHEWTAGFEGYSL<ESRSNIAFWNDSQSSGVLYSRTPTYFCG |
Parental | QTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDI |
QTLTFRVE.VGQ.......GV.AE...GYDSLQ.DQA.C.STNG.VFVNGKEMTN.L..VTSG.TVTFDI | |
Retrocopy | QTLTFRVEIVGQ---KRQYGVFAERRNGYDSLQQDQAICMSTNGEVFVNGKEMTNELTSVTSGCTVTFDI |
Parental | EAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPGWKVLV |
EAVTLGTT.NNEG..FKLRVTISSNNREVVF..LLDQSCGSLYFGCSFF.PGWK.LV | |
Retrocopy | EAVTLGTTNNNEGRNFKLRVTISSNNREVVFN*LLDQSCGSLYFGCSFFHPGWKILV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .75 RPM |
SRP007412_heart | 0 .00 RPM | 4 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .70 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3360 |
Pan troglodytes | retro_ptro_2175 |
Gorilla gorilla | retro_ggor_2278 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies |
retro_pabe_1925, retro_pabe_1984, retro_pabe_2672 ,
|
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |