RetrogeneDB ID: | retro_pcap_136 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_102027:1201..1551(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO1 | ||
Ensembl ID: | ENSPCAG00000006870 | ||
Aliases: | None | ||
Description: | small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502] |
Percent Identity: | 54.17 % |
Parental protein coverage: | 82.27 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | RFGLPAVAAVRRPP-GEATVTMSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKE |
RF...AVAAV.RP..GEAT.TMSDQ.AK.ST..LG.KKEGEYI.L.V.GQDSS..HFK.KM.T.LK.LK. | |
Retrocopy | RFFPLAVAAVWRPS>GEATITMSDQKAKGSTKNLGNKKEGEYI*L*VTGQDSSGLHFKIKMKTLLKQLK* |
Parental | SYCQ-RGVPMNSLRFLFEGQRIADNHT-PKELGMEEEDV-IEVYQEQTGG |
.Y.Q....P.NS.RFL.........H...KELG....D.......E..GG | |
Retrocopy | LYYQIYRTPSNSFRFL*RLKNYYESHS<QKELGIKANDK<MKFLREKQGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009859 | 6 retrocopies | |
Canis familiaris | ENSCAFG00000012431 | 8 retrocopies | |
Felis catus | ENSFCAG00000031005 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000022855 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000008968 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000007504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005240 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000030345 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006870 | 1 retrocopy |
retro_pcap_136 ,
|
Pongo abelii | ENSPPYG00000013083 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012817 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011968 | 1 retrocopy |