RetrogeneDB ID: | retro_pcap_226 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_19045:12024..12331(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN6 | ||
Ensembl ID: | ENSPCAG00000006019 | ||
Aliases: | None | ||
Description: | prefoldin subunit 6 [Source:HGNC Symbol;Acc:4926] |
Percent Identity: | 93.2 % |
Parental protein coverage: | 79.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAELIQKKLQG-EVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQEL |
MAELIQKKLQG.EVEKYQQLQKDLSKSMSGRQKLEAQLTENN.VK.ELALLDGSNVVFKLLGPVLVKQEL | |
Retrocopy | MAELIQKKLQG>EVEKYQQLQKDLSKSMSGRQKLEAQLTENNTVK*ELALLDGSNVVFKLLGPVLVKQEL |
Parental | GEARATVGKRLDYITAEIKRYESQLRDLEKQSE |
GEARATVGKRLDY.TAEIK..E.QLRDLEKQSE | |
Retrocopy | GEARATVGKRLDYVTAEIK*FEPQLRDLEKQSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000011211 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000012967 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016778 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028341 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000983 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006019 | 1 retrocopy |
retro_pcap_226 ,
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