RetrogeneDB ID: | retro_ptro_2811 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:15297706..15298677(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSIP1 | ||
Ensembl ID: | ENSPTRG00000020786 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.35 % |
Parental protein coverage: | 61.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKP |
TRDFKPGDLIFAKMKGYPHW.A.VDEV.DGAVKPPTNKLPIFFFGTHETAFLGPK.IFPYSENKEKYGKP | |
Retrocopy | TRDFKPGDLIFAKMKGYPHWSAGVDEVLDGAVKPPTNKLPIFFFGTHETAFLGPKVIFPYSENKEKYGKP |
Parental | NKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKASNEDVTKAVDITT |
NKR..F.......DNNPKVKFSSQQAATKQSNASS.VEVEEKETSVSKEDTDHEEKASNEDVTKAVD.TT | |
Retrocopy | NKR--F*RRFMGTDNNPKVKFSSQQAATKQSNASSNVEVEEKETSVSKEDTDHEEKASNEDVTKAVDVTT |
Parental | PKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDII |
PKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKRGRPAATEVKI.KPRGRPKMVKQPCPSESDII | |
Retrocopy | PKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKRGRPAATEVKIQKPRGRPKMVKQPCPSESDII |
Parental | TEEDKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVES-KRKNLAKTGVTSTSDSEEEGD |
TEEDKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEPDK.E.KKEVES.KRKNLA.TGVTSTSDSEEEGD | |
Retrocopy | TEEDKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEPDKIE*KKEVES<KRKNLANTGVTSTSDSEEEGD |
Parental | DQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQ |
DQEGEKKRKGGRN.QTAHRRNMLKGQ.EKEAADRKRKQE.Q.ETE.Q | |
Retrocopy | DQEGEKKRKGGRNVQTAHRRNMLKGQNEKEAADRKRKQEKQVETEHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .13 RPM | 60 .15 RPM |
SRP007412_cerebellum | 0 .39 RPM | 130 .49 RPM |
SRP007412_heart | 0 .03 RPM | 19 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .46 RPM |
SRP007412_liver | 0 .10 RPM | 10 .41 RPM |
SRP007412_testis | 0 .42 RPM | 166 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4136 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012471 | 1 retrocopy | |
Homo sapiens | ENSG00000164985 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028484 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001474 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020786 | 1 retrocopy |
retro_ptro_2811 ,
|
Tupaia belangeri | ENSTBEG00000000715 | 1 retrocopy |