RetrogeneDB ID: | retro_pvam_63 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1207:27928..28247(+) | ||
Located in intron of: | ENSPVAG00000006181 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBD2 | ||
Ensembl ID: | ENSPVAG00000000384 | ||
Aliases: | None | ||
Description: | pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 [Source:HGNC Symbol;Acc:24474] |
Percent Identity: | 66.36 % |
Parental protein coverage: | 83.59 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | PGAAAMSADAHWLTAEERKQVILDLKAARWSELSERDAIYKEFSFKNFN-AFGFMSRVALQAEKMN-HH- |
P...AM.ADA..LTAE....VILDLKAA...EL..RDAIYKEF.F.NFN.AFGFMS.VALQAE.MN.HH. | |
Retrocopy | PKPRAMLADAR*LTAEKKSHVILDLKAAG*LELN*RDAIYKEF-FRNFNLAFGFMSFVALQAEQMN<HH< |
Parental | PEWFNVYNKVQITLTSHDCXXXXKRDVKLAKFIEKAAASL |
PE.F.VY.K.Q..LT..DC....KR.V.LAKFIEKAAAS. | |
Retrocopy | PE*FSVYSKAQVILTFNDCGRLTKRNVTLAKFIEKAAASV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000019125 | 2 retrocopies | |
Equus caballus | ENSECAG00000015810 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000007051 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016658 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000003784 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012638 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014351 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000384 | 2 retrocopies |
retro_pvam_63 , retro_pvam_750,
|
Tursiops truncatus | ENSTTRG00000016874 | 3 retrocopies |