RetrogeneDB ID: | retro_pvam_868 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_14140:56..689(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPVAG00000005481 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP1 | ||
Ensembl ID: | ENSPVAG00000012284 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
Percent Identity: | 85.98 % |
Parental protein coverage: | 58.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFK |
MD.GV.E.GLNVTLTIRLLMHGKEVGSIIGKKGESVK..REESGARINISEGNCPERIITL.GPTNAIFK | |
Retrocopy | MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFK |
Parental | AFAMIIDKLEEDISSSMTNSTAASKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
AFAMIIDKLEEDI.SSMTNSTAAS.PPVTLRLVVPA.QCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN | |
Retrocopy | AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
Parental | STERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASF |
STERAITIAG.PQS..ECVKQIC.VMLETLSQSP.....TIPY.P.P.SSPVI.AGGQDR.S...D.A.. | |
Retrocopy | STERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCS---DAAGY |
Parental | PHTT |
PH.T | |
Retrocopy | PHAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |