RetrogeneDB ID: | retro_pvam_908 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_16018:13131..13572(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPVAG00000010715 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSPVAG00000015070 | ||
Aliases: | None | ||
Description: | CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164] |
Percent Identity: | 75. % |
Parental protein coverage: | 83.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYN |
.RGR......R..Q..S..LPDICYRCGESGH.AK.CDL.E..CYNCG..GHIAKDC.EPKRER.QCCY. | |
Retrocopy | ARGRRARARGRDSQSTSNTLPDICYRCGESGHHAKNCDLPENICYNCGGTGHIAKDCAEPKRERDQCCYT |
Parental | CGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYTDCGESGHLAR |
CG..GHLARDCD..DEQKCY.CG..GHIQKDCT.VKCYRCGE.GHVAINC.KTSEVNCY..CG.SGHLAR | |
Retrocopy | CGRTGHLARDCDLQDEQKCYTCGKHGHIQKDCTQVKCYRCGEMGHVAINCPKTSEVNCYR-CGASGHLAR |
Parental | ECTIEATA |
EC.IEATA | |
Retrocopy | ECSIEATA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012159 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017430 | 1 retrocopy | |
Equus caballus | ENSECAG00000009512 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008408 | 5 retrocopies | |
Felis catus | ENSFCAG00000028042 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002502 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008696 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013898 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015070 | 1 retrocopy |
retro_pvam_908 ,
|
Sorex araneus | ENSSARG00000011874 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017132 | 1 retrocopy |