RetrogeneDB ID: | retro_sara_325 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_163476:5990..6568(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSSARG00000008509 | ||
Aliases: | None | ||
Description: | ras homolog family member A [Source:HGNC Symbol;Acc:667] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
MAAI.KKLV.VGDGACGK.CLL.V.SKDQFP.VYVPTV.ENYVAD.EVDGKQ.ELALWDTAGQED.DRLR | |
Retrocopy | MAAIWKKLVVVGDGACGKACLLTVSSKDQFPGVYVPTVSENYVADTEVDGKQGELALWDTAGQEDHDRLR |
Parental | PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQVWGR |
PLSYPDTDVILMCFSID.PDSLE.IPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELA.MKQ.... | |
Retrocopy | PLSYPDTDVILMCFSIDRPDSLEHIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAEMKQ---- |
Parental | APVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA-RRGKKKSGCLVL |
.PVKPEEGRDMA.RIGAFGY.ECSAKTKDGVREVFEMATRAALQA.RRGK.KSGCLVL | |
Retrocopy | EPVKPEEGRDMASRIGAFGYRECSAKTKDGVREVFEMATRAALQA<RRGKEKSGCLVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |