Parental gene:

ENSCJAG00000003904

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:25044033..25091850(-)


>ENSCJAG00000003904
ATGGCTGCCATTCGGAAGAAACTGGTGATTGTTGGTGATGGAGCCTGTGGAAAAACATGCTTGCTCATAGTCTTCAGCAA
GGACCAGTTCCCAGAGGTTTATGTGCCCACAGTGTTTGAGAACTATGTGGCAGATATCGAGGTGGATGGAAAACAGGTAG
AGTTGGCTTTGTGGGACACAGCTGGACAGGAAGATTATGATCGCCTGAGACCCCTCTCCTACCCAGACACCGATGTTATT
CTGATGTGTTTTTCCATCGACAGTCCTGATAGTTTAGAAAACATCCCAGAAAAGTGGACCCCGGAAGTCAAGCATTTCTG
TCCCAATGTGCCCATCATCCTGGTTGGGAATAAGAAGGATCTTCGGAATGATGAGCACACAAGGCGGGAGCTAGCCAAGA
TGAAGCAGGAACCTGTGAAACCTGAAGAAGGAAGAGATATGGCAAACAGGATTGGCGCTTTTGGGTACATGGAGTGTTCA
GCAAAGACCAAAGATGGAGTGAGAGAGGTTTTTGAAATGGCTACAAGAGCTGCTCTGCAAGCTAGACGTGGGAAGAAAAA
ATCTGGGTGCCTTGTCTTGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 54 .60 RPM
SRP051959_skeletal_muscle 32 .95 RPM
SRP051959_lymph_node 50 .71 RPM
SRP051959_lung 60 .04 RPM
SRP051959_liver 36 .61 RPM
SRP051959_kidney 46 .72 RPM
SRP051959_heart 44 .75 RPM
SRP051959_colon 70 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008297 ortholog_one2many 1 retrogene
retro_acar_41,
Ailuropoda melanoleuca ENSAMEG00000012584 ortholog_one2one 3 retrogenes
retro_amel_101, retro_amel_1515, retro_amel_615,
Anas platyrhynchos ENSAPLG00000014687 ortholog_one2many 1 retrogene
retro_apla_10,
Bos taurus ENSBTAG00000004279 ortholog_one2one 2 retrogenes
retro_btau_206, retro_btau_540,
Canis familiaris ENSCAFG00000023066 ortholog_one2many 2 retrogenes
retro_cfam_1652, retro_cfam_186,
Callithrix jacchus ENSCJAG00000013018 other_paralog 1 retrogene
retro_cjac_3930,
Callithrix jacchus ENSCJAG00000013657 within_species_paralog 2 retrogenes
retro_cjac_1657, retro_cjac_2027,
Cavia porcellus ENSCPOG00000014073 possible_ortholog 1 retrogene
retro_cpor_514,
Dasypus novemcinctus ENSDNOG00000012825 ortholog_one2one 6 retrogenes
retro_dnov_1012, retro_dnov_1814, retro_dnov_1904, retro_dnov_2090, retro_dnov_29, retro_dnov_326,
Dipodomys ordii ENSDORG00000003382 ortholog_one2one 3 retrogenes
retro_dord_1, retro_dord_18, retro_dord_538,
Erinaceus europaeus ENSEEUG00000013063 possible_ortholog 1 retrogene
retro_eeur_147,
Felis catus ENSFCAG00000027456 ortholog_one2one 1 retrogene
retro_fcat_29,
Homo sapiens ENSG00000067560 possible_ortholog 2 retrogenes
retro_hsap_108, retro_hsap_3632,
Gasterosteus aculeatus ENSGACG00000005670 possible_ortholog 1 retrogene
retro_gacu_9,
Gallus gallus ENSGALG00000003806 ortholog_one2many 1 retrogene
retro_ggal_5,
Gorilla gorilla ENSGGOG00000012843 ortholog_one2one 1 retrogene
retro_ggor_2450,
Gadus morhua ENSGMOG00000008188 possible_ortholog 1 retrogene
retro_gmor_18,
Latimeria chalumnae ENSLACG00000016941 ortholog_one2many 1 retrogene
retro_lcha_15,
Loxodonta africana ENSLAFG00000009726 ortholog_one2one 8 retrogenes
retro_lafr_1196, retro_lafr_1197, retro_lafr_1198, retro_lafr_178, retro_lafr_203, retro_lafr_261, retro_lafr_392, retro_lafr_82,
Meleagris gallopavo ENSMGAG00000002280 ortholog_one2many 1 retrogene
retro_mgal_2,
Myotis lucifugus ENSMLUG00000013911 ortholog_one2one 6 retrogenes
retro_mluc_108, retro_mluc_193, retro_mluc_1976, retro_mluc_2553, retro_mluc_2554, retro_mluc_2555,
Macaca mulatta ENSMMUG00000012962 possible_ortholog 1 retrogene
retro_mmul_977,
Monodelphis domestica ENSMODG00000012981 possible_ortholog 2 retrogenes
retro_mdom_19, retro_mdom_294,
Mustela putorius furo ENSMPUG00000013840 possible_ortholog 5 retrogenes
retro_mputfur_1015, retro_mputfur_140, retro_mputfur_1541, retro_mputfur_1588, retro_mputfur_650,
Mus musculus ENSMUSG00000007815 ortholog_one2many 9 retrogenes
retro_mmus_178, retro_mmus_191, retro_mmus_2041, retro_mmus_2507, retro_mmus_3728, retro_mmus_3729, retro_mmus_3964, retro_mmus_3965, retro_mmus_3966,
Nomascus leucogenys ENSNLEG00000006839 ortholog_one2one 4 retrogenes
retro_nleu_104, retro_nleu_2207, retro_nleu_377, retro_nleu_814,
Ornithorhynchus anatinus ENSOANG00000013807 ortholog_one2many 1 retrogene
retro_oana_7,
Oryctolagus cuniculus ENSOCUG00000013323 ortholog_one2one 3 retrogenes
retro_ocun_1075, retro_ocun_726, retro_ocun_854,
Otolemur garnettii ENSOGAG00000028489 ortholog_one2one 1 retrogene
retro_ogar_2340,
Oreochromis niloticus ENSONIG00000018884 possible_ortholog 1 retrogene
retro_onil_32,
Ochotona princeps ENSOPRG00000009638 possible_ortholog 1 retrogene
retro_opri_590,
Oryzias latipes ENSORLG00000018734 possible_ortholog 1 retrogene
retro_olat_13,
Procavia capensis ENSPCAG00000009699 ortholog_one2one 3 retrogenes
retro_pcap_191, retro_pcap_202, retro_pcap_98,
Pelodiscus sinensis ENSPSIG00000015328 ortholog_one2many 1 retrogene
retro_psin_7,
Pan troglodytes ENSPTRG00000014922 ortholog_one2one 3 retrogenes
retro_ptro_10, retro_ptro_2456, retro_ptro_625,
Pteropus vampyrus ENSPVAG00000008738 ortholog_one2one 1 retrogene
retro_pvam_599,
Rattus norvegicus ENSRNOG00000050519 ortholog_one2many 3 retrogenes
retro_rnor_127, retro_rnor_2899, retro_rnor_408,
Sorex araneus ENSSARG00000008509 possible_ortholog 2 retrogenes
retro_sara_137, retro_sara_325,
Sarcophilus harrisii ENSSHAG00000016308 ortholog_one2one 2 retrogenes
retro_shar_60, retro_shar_96,
Sus scrofa ENSSSCG00000022080 ortholog_one2one 1 retrogene
retro_sscr_72,
Ictidomys tridecemlineatus ENSSTOG00000004561 possible_ortholog 2 retrogenes
retro_itri_39, retro_itri_96,
Tupaia belangeri ENSTBEG00000002417 possible_ortholog 1 retrogene
retro_tbel_26,
Takifugu rubripes ENSTRUG00000011944 possible_ortholog 1 retrogene
retro_trub_19,
Tarsius syrichta ENSTSYG00000008220 possible_ortholog 3 retrogenes
retro_tsyr_1604, retro_tsyr_413, retro_tsyr_593,
Tursiops truncatus ENSTTRG00000017370 possible_ortholog 2 retrogenes
retro_ttru_27, retro_ttru_339,
Vicugna pacos ENSVPAG00000010931 ortholog_one2one 3 retrogenes
retro_vpac_130, retro_vpac_24, retro_vpac_492,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_411 94.85 100.00
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2. retro_cjac_1306 85.34 98.96
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3. retro_cjac_2010 95.85 100.00
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Download FASTA sequences of all ENSCJAG00000003904 retrocopies