RetrogeneDB ID: | retro_itri_96 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393503.1:35831..36413(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000024170 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000004561 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
MAAI.KKLV.VGDGA.GKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE.YDRLR | |
Retrocopy | MAAIKKKLVSVGDGASGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEAYDRLR |
Parental | PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQAFPV |
PLSYPDTDVILMCFSID.PDSL.NI..KWTPEVKHFCP.VPI.LVGNK.DLRNDEHTR..LAKMKQ..PV | |
Retrocopy | PLSYPDTDVILMCFSIDNPDSLDNIIKKWTPEVKHFCPSVPILLVGNKNDLRNDEHTRQKLAKMKQE-PV |
Parental | KPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL |
KPEEG.DMAN.IGAFGYMECSAK.KDGVR.VFEMATRAALQ.R..KKK..CLVL | |
Retrocopy | KPEEGKDMANGIGAFGYMECSAKIKDGVRAVFEMATRAALQPRCWKKKPKCLVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |