RetrogeneDB ID: | retro_sara_500 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_228185:876..1270(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 78.36 % |
Parental protein coverage: | 97.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAPR |
VVPLAT.MRIYKKGDIVDIKGMGTVQKGMPHKCYHGKT.RVYNVTQHAVGIVVNKQVKGKILAKRI.... | |
Retrocopy | VVPLATHMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKT*RVYNVTQHAVGIVVNKQVKGKILAKRINVCI |
Parental | ENIKHSEN-DNLLQ-VKENDQ-RKKEAKEKGTWVRLERQPTSLRETHFVR-TSGKEPDQLEASP |
E.IKHS...D..L..VKENDQ..KKEAKEKGTWV.L.RQP...RE.HFVR...GKEP..LE..P | |
Retrocopy | EHIKHSKSRDSFLKWVKENDQ<KKKEAKEKGTWVQLKRQPAPPREAHFVR<SNGKEPERLEPIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |