Parental gene:

ENSLAFG00000003677

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_29:13049748..13052044(+)


>ENSLAFG00000003677
ATGACGAACACAAAGGGAAAGAGAAGAGGCACCCGCTATATGTTCTCTAGGCCTTTTAGAAAACATGGCGTTGTTCCTTT
GGCCACATACATGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAACGGGCACTGTTCAAAAAGGAATGCCCC
ACAAATGTTACCATGGCAAAACTGGGAGAGTCTACAATGTTACCCAGCATGCTGTTGGCATTATTGTGAACAAACAAGTT
AAGGGCAAGATTCTCGCGAAGAGAATTAACGTGCGTGTTGAGCACATTAAGCACTCTAAGAGCCGAGATAGTTTCTTGAA
ACGCGTGAAGGAAAATGATCAGAAAAAGAAGGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTGAAACGCCAGCCTGCTC
CACCCCGAGAGGCACACTTTGTGAGAACCAACGGAAAGGAGCCTGAGCTGCTGGAACCTATTCCCTATGAATTCATGGCC
TAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003169 possible_ortholog 1 retrogene
Bos taurus ENSBTAG00000001648 possible_ortholog 5 retrogenes
Choloepus hoffmanni ENSCHOG00000007867 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000019355 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000008784 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000002226 possible_ortholog 15 retrogenes
Equus caballus ENSECAG00000010661 possible_ortholog 5 retrogenes
Felis catus ENSFCAG00000006750 possible_ortholog 1 retrogene
Homo sapiens ENSG00000122026 possible_ortholog 105 retrogenes
retro_hsap_1007, retro_hsap_1011, retro_hsap_1019, retro_hsap_1032, retro_hsap_1040, retro_hsap_1099, retro_hsap_1107, retro_hsap_1213, retro_hsap_1218, retro_hsap_122, retro_hsap_1280, retro_hsap_1288, retro_hsap_1298, retro_hsap_1379, retro_hsap_1381, retro_hsap_1419, retro_hsap_143, retro_hsap_1430, retro_hsap_1446, retro_hsap_1453, retro_hsap_1505, retro_hsap_1576, retro_hsap_1578, retro_hsap_160, retro_hsap_1600, retro_hsap_1663, retro_hsap_1712, retro_hsap_1723, retro_hsap_1734, retro_hsap_1757, retro_hsap_1805, retro_hsap_1842, retro_hsap_1886, retro_hsap_1904, retro_hsap_1920, retro_hsap_2050, retro_hsap_2088, retro_hsap_2109, retro_hsap_2153, retro_hsap_2178, retro_hsap_2221, retro_hsap_2245, retro_hsap_2258, retro_hsap_2266, retro_hsap_2357, retro_hsap_2442, retro_hsap_252, retro_hsap_2625, retro_hsap_2635, retro_hsap_2655, retro_hsap_2716, retro_hsap_2855, retro_hsap_2876, retro_hsap_2916, retro_hsap_2937, retro_hsap_3037, retro_hsap_3039, retro_hsap_3091, retro_hsap_3094, retro_hsap_3119, retro_hsap_3160, retro_hsap_3185, retro_hsap_3264, retro_hsap_3304, retro_hsap_3375, retro_hsap_3429, retro_hsap_3435, retro_hsap_3521, retro_hsap_3555, retro_hsap_3558, retro_hsap_362, retro_hsap_3628, retro_hsap_3658, retro_hsap_3662, retro_hsap_367, retro_hsap_3688, retro_hsap_3694, retro_hsap_3705, retro_hsap_3747, retro_hsap_3764, retro_hsap_381, retro_hsap_3911, retro_hsap_3945, retro_hsap_3955, retro_hsap_4092, retro_hsap_4193, retro_hsap_424, retro_hsap_4276, retro_hsap_4283, retro_hsap_4286, retro_hsap_4302, retro_hsap_4713, retro_hsap_4733, retro_hsap_496, retro_hsap_503, retro_hsap_563, retro_hsap_573, retro_hsap_582, retro_hsap_626, retro_hsap_654, retro_hsap_738, retro_hsap_752, retro_hsap_819, retro_hsap_900, retro_hsap_965,
Latimeria chalumnae ENSLACG00000012678 ortholog_one2many 1 retrogene
Microcebus murinus ENSMICG00000014754 possible_ortholog 54 retrogenes
Myotis lucifugus ENSMLUG00000010093 possible_ortholog 46 retrogenes
Macaca mulatta ENSMMUG00000023368 possible_ortholog 2 retrogenes
Macaca mulatta ENSMMUG00000029574 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000008923 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000009353 possible_ortholog 23 retrogenes
Mus musculus ENSMUSG00000041453 possible_ortholog 101 retrogenes
retro_mmus_1012, retro_mmus_1046, retro_mmus_1057, retro_mmus_1083, retro_mmus_1123, retro_mmus_1199, retro_mmus_1287, retro_mmus_1354, retro_mmus_1461, retro_mmus_1475, retro_mmus_1529, retro_mmus_1561, retro_mmus_1572, retro_mmus_1596, retro_mmus_1617, retro_mmus_1641, retro_mmus_1644, retro_mmus_17, retro_mmus_1714, retro_mmus_1739, retro_mmus_1762, retro_mmus_1797, retro_mmus_1848, retro_mmus_1860, retro_mmus_1862, retro_mmus_1875, retro_mmus_1897, retro_mmus_1915, retro_mmus_1931, retro_mmus_1936, retro_mmus_1994, retro_mmus_2042, retro_mmus_2049, retro_mmus_2101, retro_mmus_2130, retro_mmus_2176, retro_mmus_2179, retro_mmus_2185, retro_mmus_2214, retro_mmus_2233, retro_mmus_2237, retro_mmus_2238, retro_mmus_2279, retro_mmus_2309, retro_mmus_2312, retro_mmus_2335, retro_mmus_2344, retro_mmus_2395, retro_mmus_2447, retro_mmus_2517, retro_mmus_2567, retro_mmus_2585, retro_mmus_2598, retro_mmus_266, retro_mmus_2662, retro_mmus_2698, retro_mmus_2707, retro_mmus_2778, retro_mmus_2808, retro_mmus_2853, retro_mmus_2874, retro_mmus_2945, retro_mmus_2980, retro_mmus_3035, retro_mmus_3055, retro_mmus_3085, retro_mmus_3103, retro_mmus_3112, retro_mmus_3220, retro_mmus_3252, retro_mmus_3261, retro_mmus_3295, retro_mmus_3318, retro_mmus_3328, retro_mmus_333, retro_mmus_3341, retro_mmus_3446, retro_mmus_3545, retro_mmus_3581, retro_mmus_3712, retro_mmus_397, retro_mmus_400, retro_mmus_401, retro_mmus_598, retro_mmus_601, retro_mmus_606, retro_mmus_663, retro_mmus_734, retro_mmus_735, retro_mmus_758, retro_mmus_782, retro_mmus_806, retro_mmus_835, retro_mmus_862, retro_mmus_883, retro_mmus_918, retro_mmus_932, retro_mmus_940, retro_mmus_957, retro_mmus_993, retro_mmus_998,
Nomascus leucogenys ENSNLEG00000000327 possible_ortholog 6 retrogenes
Oryctolagus cuniculus ENSOCUG00000002506 possible_ortholog 10 retrogenes
Otolemur garnettii ENSOGAG00000033936 possible_ortholog 4 retrogenes
Otolemur garnettii ENSOGAG00000034423 possible_ortholog 1 retrogene
Pongo abelii ENSPPYG00000005233 possible_ortholog 7 retrogenes
Pongo abelii ENSPPYG00000006167 possible_ortholog 2 retrogenes
Pan troglodytes ENSPTRG00000005728 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000000077 possible_ortholog 82 retrogenes
Rattus norvegicus ENSRNOG00000000957 possible_ortholog 13 retrogenes
Sorex araneus ENSSARG00000013129 possible_ortholog 51 retrogenes
Sarcophilus harrisii ENSSHAG00000000845 possible_ortholog 11 retrogenes
Sus scrofa ENSSSCG00000009303 possible_ortholog 9 retrogenes
Vicugna pacos ENSVPAG00000006206 ortholog_one2many 13 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_63 74.21 99.38
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2. retro_lafr_89 92.64 100.00
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3. retro_lafr_97 96.25 100.00
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4. retro_lafr_308 68.75 98.75
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5. retro_lafr_331 78.75 99.38
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6. retro_lafr_583 86.96 100.00
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7. retro_lafr_652 51.75 88.12
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8. retro_lafr_738 79.75 100.00
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9. retro_lafr_740 96.88 100.00
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10. retro_lafr_856 77.16 100.00
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11. retro_lafr_1167 82.10 100.00
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Download FASTA sequences of all ENSLAFG00000003677 retrocopies