RetrogeneDB ID: | retro_shar_693 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL857276.1:126440..126949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000001478 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.74 % |
Parental protein coverage: | 73.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL-IHARYILTNRGIAQMLEKYQQGDFGYCPRV |
PH......MIL.LE..EELEDN.NQS.L..Q..EMLY.L.IHA.YILTN.GIAQ.LEKYQ..DFGYC..V | |
Retrocopy | PHSSTKKYMILNLEL-EELEDNRNQSELNGQTVEMLYRL<IHACYILTNSGIAQVLEKYQHRDFGYCLHV |
Parental | YCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQ |
YCENQPML.IGLSDIP.E.M.KLYCPKC.D.YT...SRHH..DGA.F.T.FPHMLFMVHPEYRPKRPANQ | |
Retrocopy | YCENQPMLAIGLSDIPSESM*KLYCPKCVDAYTSNLSRHHYKDGA*FDTSFPHMLFMVHPEYRPKRPANQ |
Parental | FVPRLYGFKIHPMAYQLQLQAASNFKSPVKTI |
FVPRLYGFKIHPMAYQL.LQAASNFKS.VKTI | |
Retrocopy | FVPRLYGFKIHPMAYQL*LQAASNFKSFVKTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005751 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002996 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018728 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014179 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006417 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015168 | 3 retrocopies | |
Felis catus | ENSFCAG00000007642 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004095 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000015287 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000011129 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023483 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000012138 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001478 | 2 retrocopies |
retro_shar_672, retro_shar_693 ,
|
Sus scrofa | ENSSSCG00000001414 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014103 | 2 retrocopies |