>retro_sita_15
ATGTCCACGGCGGAGGAAGCCGCCGGTGCCTTCGACCGACTGAGCGAGCTCAAGGCGTTCGACGACACCAAGGCCGGCGT
CAAGGGCCTCGTCGACGCCGGCATCACCGCCGTCCCCGCCATCTTCCGCCACCACCACCAGGGCCCCCTCGTATCCTCTG
TCAGCAGCAGCGGCAGCGGCGGCGGCGGCGCCATCAGCATCCCGGTCATCGACCTCTCGGCGTCTTCGTCATCGGACGCC
CGCGCCCGCGCGGAGGTGGTGGCCCAGGTTAAGGCCGCGGCGGAGACGGCCGGGCTCTTCCACCTTGTCAACCACGGCGT
CCCCGGCGAGCTCTTGTCTGATATGCTCGCCTCCGTGCGGCGGTTCCACGAGGCGCCACCGGAGGCGAAACGGCCGTACT
ACACCCGCGACCCCGGGCGCCGCCTCCGCTTCAACTCCAACTTCGACCTCTTCAGCTCGCCGGCGGCCAACTGGCGCGAC
ACCCTCTTCTGCGCCGCGGCGCCGGATCCCCCACCCCCGGAGGAGCTCCCGCCCGCCGTCCGCCACGTGATGCCCGAGTA
CGCCGCCGCCGCGCGCGGGGTGGCGGCGCGGGTGTTGGCGCTCCTGTCGGAGGCGCTGGGGCTCGCCGCCGGCCGCCTCG
CCGGGATGGGGTGCGCGGAGGGGCTCAGCCTGGTGTGCAACTACTACCCGCCGTGCCCGGAGCCGGAGCTCACCCTGGGG
TGCGGCGCGCACTCGGACCCCAGCTTCCTCACCGTGCTGCTGCGGGACGCGCACGATGAGGGGGGCCTGCAGGCGCGCCT
CGGCTGCGGCGGCGGAAGGTGGGTGGACGTGCCCCCCGTCGCCCCCTGCGCCCTCCTGGTGATCGTCGGTGACCTCCTCC
AGCTCGTCAGCAACGGGCGGTTCAGGAGCGCGGAGCACCGGGTGGTGGCCAGACGGAGCACGGACAAGGCGAGGGTGTCG
GTGGCATGCTTCTTCAACGCCGACGTCGCCAGGTCCACGAGGCTCTACGGGCCCATCGCCGAGCTCACGTCAGGCGGAAA
CGGCGACGACGGCGACGGCGCGCTGTACAGGAGCGTGACGGTGCCGGAGTTCCTGGCGCACTACGACAAGAAAGGCCTCG
ACGGCCGCCCGGCGCTCGACCACTTCCGGCTGCGATAG
ORF - retro_sita_15 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.23 % |
Parental protein coverage: |
87.43 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SAAGVASGYDRRRELQAFDDTKAGVKGLVDAGVTAIPSIF-HHPPESLEDTTTSPPSCTDGAFAIPVVDL |
| .A...A...DR..EL.AFDDTKAGVKGLVDAG.TA.P.IF.HH....L.....S..S...GA..IPV.DL |
Retrocopy | TAEEAAGAFDRLSELKAFDDTKAGVKGLVDAGITAVPAIFRHHHQGPLVSSVSSSGSGGGGAISIPVIDL |
|
Parental | SA----DAR-REDVVAQVRHAAGTVGFFHVVNHGVPEGLMAGMLAGARRFNEGPAEAKRALYSRDQARKV |
| SA....DAR.R..VVAQV..AA.T.G.FH.VNHGVP..L...MLA..RRF.E.P.EAKR..Y.RD..R.. |
Retrocopy | SASSSSDARARAEVVAQVKAAAETAGLFHLVNHGVPGELLSDMLASVRRFHEAPPEAKRPYYTRDPGRRL |
|
Parental | RFGSNFDLFQSAAANWRDTLFCDLAPDPPLPEELPEVLRNVIMEYGDAVMKLGLRVSELLSESLGLSSGH |
| RF.SNFDLF.S.AANWRDTLFC..APDPP.PEELP...R.V..EY..A......RV..LLSE.LGL..G. |
Retrocopy | RFNSNFDLFSSPAANWRDTLFCAAAPDPPPPEELPPAVRHVMPEYAAAARGVAARVLALLSEALGLAAGR |
|
Parental | LREMGCMESLHAVCQYYPPCPEPHLTFGIKSHTDPAFFTVLLQDG-STGGLQVLVDRGGGHRRTWVDVPP |
| L..MGC.E.L..VC.YYPPCPEP.LT.G...H.DP.F.TVLL.D....GGLQ.....GGG....WVDVPP |
Retrocopy | LAGMGCAEGLSLVCNYYPPCPEPELTLGCGAHSDPSFLTVLLRDAHDEGGLQARLGCGGGR---WVDVPP |
|
Parental | L-PGSLTVNIGDLLQLVSNDRFRSVEHRVPAIKSKDPARVSVASFFNTDLKRSTRLYGPITD |
| ..P..L.V..GDLLQLVSN.RFRS.EHRV.A..S.D.ARVSVA.FFN.D..RSTRLYGPI.. |
Retrocopy | VAPCALLVIVGDLLQLVSNGRFRSAEHRVVARRSTDKARVSVACFFNADVARSTRLYGPIAE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Setaria italica was not studied using RNA-Seq expression data.
Setaria italica was not studied using ChIP-Seq data.
Setaria italica was not studied using EST data.
Setaria italica was not studied using FANTOM5 data.
retro_sita_15 was not experimentally validated.
Retrocopy orthology:
Setaria italica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.