Common name: Foxtail millet
Latin name: Setaria italica
Genome assembly: JGIv2.0
All retrocopies: 48
Parental genes: 47

Summary: Number of retrocopies :
Conserved ORF: 45 ORF 3 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_sita_1 52.89 % 89.21 % ORF
2. retro_sita_2 54.10 % 88.92 % ORF
3. retro_sita_3 55.56 % 95.85 % ORF
4. retro_sita_4 56.21 % 50.88 % ORF
5. retro_sita_5 69.78 % 80.41 % ORF
6. retro_sita_6 64.21 % 99.55 % ORF
7. retro_sita_7 72.92 % 94.12 % ORF
8. retro_sita_8 65.17 % 86.84 % ORF
9. retro_sita_9 58.64 % 72.30 % ORF
10. retro_sita_10 80.36 % 65.12 % ORF
11. retro_sita_11 84.76 % 100.00 % ORF
12. retro_sita_12 74.13 % 89.08 % ORF
13. retro_sita_13 79.44 % 70.69 % ORF
14. retro_sita_14 63.18 % 54.16 % ORF
15. retro_sita_15 60.23 % 87.43 % ORF
16. retro_sita_16 63.23 % 84.56 % ORF
17. retro_sita_17 76.44 % 98.71 % ORF
18. retro_sita_18 74.26 % 93.75 % ORF
19. retro_sita_19 50.60 % 90.86 % ORF
20. retro_sita_20 67.19 % 97.53 % ORF
21. retro_sita_21 51.43 % 89.68 % ORF
22. retro_sita_22 83.43 % 98.53 % ORF
23. retro_sita_23 51.28 % 95.84 % ORF
24. retro_sita_24 63.07 % 65.10 % ORF
25. retro_sita_25 59.09 % 68.57 % ORF
26. retro_sita_26 80.95 % 56.65 % ORF
27. retro_sita_27 63.51 % 80.94 % ORF
28. retro_sita_28 74.17 % 76.26 % ORF
29. retro_sita_29 61.22 % 68.79 % ORF
30. retro_sita_30 72.12 % 99.80 % ORF
31. retro_sita_31 56.36 % 89.31 % ORF
32. retro_sita_32 55.73 % 69.64 % ORF
33. retro_sita_33 70.79 % 80.46 % ORF
34. retro_sita_34 62.68 % 87.34 % ORF
35. retro_sita_35 56.28 % 78.64 % ORF
36. retro_sita_36 65.17 % 99.20 % ORF
37. retro_sita_37 82.37 % 100.00 % ORF
38. retro_sita_38 68.69 % 96.02 % ORF
39. retro_sita_39 57.97 % 65.05 % ORF
40. retro_sita_40 61.90 % 55.84 % ORF
41. retro_sita_41 71.87 % 98.67 % ORF
42. retro_sita_46 87.89 % 51.53 % ORF
43. retro_sita_47 72.84 % 85.51 % ORF
44. retro_sita_49 54.41 % 76.40 % ORF
45. retro_sita_50 53.57 % 62.92 % ORF
46. retro_sita_51 71.65 % 55.24 % ORF
47. retro_sita_52 74.20 % 80.41 % ORF
48. retro_sita_57 52.16 % 90.20 % ORF
# Ensembl ID Symbol Description
1. Si007595m.g
2. Si024562m.g
3. Si017474m.g
4. Si000816m.g
5. Si021994m.g
6. Si035606m.g
7. Si023150m.g
8. Si003115m.g
9. Si037085m.g
10. Si008259m.g
11. Si036628m.g
12. Si001573m.g
13. Si023259m.g
14. Si014171m.g
15. Si026237m.g
16. Si030120m.g Annexin [Source:UniProtKB/TrEMBL;Acc:K3ZU39]
17. Si036015m.g
18. Si021242m.g
19. Si034718m.g signal recognition particle receptor alpha subunit family protein [Source:Projected from Arabidopsis thaliana (AT4G30600) TAIR;Acc:AT4G30600]
20. Si004698m.g
21. Si003861m.g
22. Si006418m.g
23. Si010957m.g
24. Si000029m.g
25. Si016420m.g
26. Si030277m.g reversibly glycosylated polypeptide 3 [Source:Projected from Arabidopsis thaliana (AT3G08900) TAIR;Acc:AT3G08900]
27. Si032233m.g
28. Si017990m.g
29. Si021302m.g
30. Si020002m.g Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:K3Z0D9]
31. Si024807m.g
32. Si024870m.g
33. Si010340m.g
34. Si012266m.g
35. Si008152m.g
36. Si032257m.g
37. Si006643m.g
38. Si026545m.g
39. Si024398m.g
40. Si002089m.g
41. Si001973m.g
42. Si011975m.g
43. Si035607m.g
44. Si021921m.g
45. Si009748m.g
46. Si014486m.g
47. Si007904m.g
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)