RetrogeneDB ID: | retro_tbel_1251 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4241:401685..401996(-) | ||
Located in intron of: | ENSTBEG00000013197 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R1A | ||
Ensembl ID: | ENSTBEG00000001193 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, regulatory (inhibitor) subunit 1A [Source:HGNC Symbol;Acc:9286] |
Percent Identity: | 59.43 % |
Parental protein coverage: | 78.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QIRRRRPTPATLVLTSDQSSPEIDEDRIPNPLLKSTLSMSPRQRKKMTRTTPTMKELQMMVEHHLGQQQ- |
QI.R...TPAT..LTSD.SSPEI.EDRIP.P...STL...P.Q.K.MTRTTPT....Q.M.EHHL...Q. | |
Retrocopy | QI*RHCQTPATFLLTSDKSSPEINEDRIPKP-RQSTLATFPWQHKMMTRTTPTVRACQVMNEHHLELKQ* |
Parental | QEEPEGAAKSTGTQE-SCPPGITDTEAESRLGTSGT |
.EEP...A..T..QE...PP.IT.TEAES.L.TSGT | |
Retrocopy | GEEPKRVASCTEMQE<AYPPRITGTEAESKLSTSGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000010159 | 1 retrocopy | |
Homo sapiens | ENSG00000135447 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008380 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004608 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005044 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000001193 | 20 retrocopies |
retro_tbel_1191, retro_tbel_1233, retro_tbel_1251 , retro_tbel_1264, retro_tbel_138, retro_tbel_1881, retro_tbel_2036, retro_tbel_2437, retro_tbel_2574, retro_tbel_2720, retro_tbel_3243, retro_tbel_3316, retro_tbel_3377, retro_tbel_3380, retro_tbel_3414, retro_tbel_3426, retro_tbel_4551, retro_tbel_537, retro_tbel_669, retro_tbel_899,
|