RetrogeneDB ID: | retro_tbel_4551 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_8997:25271..25663(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R1A | ||
Ensembl ID: | ENSTBEG00000001193 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, regulatory (inhibitor) subunit 1A [Source:HGNC Symbol;Acc:9286] |
Percent Identity: | 57.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MEPDNS-PRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVL-TSDQSSPEIDEDRIPNPLLKSTLSMSP |
.E.D.S.P..IQF....L...L.P...EQI.R..PT.ATLV..TS.QSSPE.DE.R...P..KSTL.M.P | |
Retrocopy | LEQDSSHPLLIQFAFCCLSHALTPAVPEQIQRHYPTSATLVV<TSNQSSPETDEGR--SPTHKSTLEMFP |
Parental | RQ-RKKMTRTTPT-MKELQMMVEHHLGQQQQEEPEGAAKSTGTQESCPPG-ITDTEAESRLGTSGTAQ |
RQ.R.KMTRT.P..M.ELQ..V.HHLG.Q..E..E...KSTGTQESC.PG..T.TE..SR.G.SGT.Q | |
Retrocopy | RQ<REKMTRTMPA<MEELQVAVRHHLGPQRAEGFESTPKSTGTQESCLPG<VTATEVRSRRGPSGTTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000010159 | 1 retrocopy | |
Homo sapiens | ENSG00000135447 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008380 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004608 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005044 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000001193 | 20 retrocopies |
retro_tbel_1191, retro_tbel_1233, retro_tbel_1251, retro_tbel_1264, retro_tbel_138, retro_tbel_1881, retro_tbel_2036, retro_tbel_2437, retro_tbel_2574, retro_tbel_2720, retro_tbel_3243, retro_tbel_3316, retro_tbel_3377, retro_tbel_3380, retro_tbel_3414, retro_tbel_3426, retro_tbel_4551 , retro_tbel_537, retro_tbel_669, retro_tbel_899,
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