RetrogeneDB ID: | retro_tbel_4145 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_68826:4660..5017(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LYPLA1 | ||
Ensembl ID: | ENSTBEG00000014207 | ||
Aliases: | None | ||
Description: | lysophospholipase I [Source:HGNC Symbol;Acc:6737] |
Percent Identity: | 69.42 % |
Parental protein coverage: | 58.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SNRIILGGFSQGGALSLYTALTTLQKLAGVTALSCWLPLRASFPQGPISGVNRDISILQCHGDCDPLVPL |
SNRII.GGFSQG.ALS...A.........VT.LS.W.PL..SFPQ.PISG.N..ISILQ.H.D.D.LVPL | |
Retrocopy | SNRIIWGGFSQGRALSIHVAHHAAED-GEVTVLS-WPPLPVSFPQNPISGLNIEISILQGHEDGDLLVPL |
Parental | MFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLLPPID |
M.GSLTVEK.KTLVNPANVTFKT...MM.SSCQQE...VKQFI.KLLPPID | |
Retrocopy | MSGSLTVEKHKTLVNPANVTFKT*KDMMPSSCQQEILEVKQFIHKLLPPID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006978 | 1 retrocopy | |
Equus caballus | ENSECAG00000016530 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001727 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008208 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013157 | 3 retrocopies | |
Mus musculus | ENSMUSG00000025903 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001027 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006751 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003767 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005246 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008320 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000014207 | 8 retrocopies |
retro_tbel_1839, retro_tbel_2439, retro_tbel_2478, retro_tbel_2907, retro_tbel_3127, retro_tbel_3466, retro_tbel_371, retro_tbel_4145 ,
|
Tursiops truncatus | ENSTTRG00000011836 | 3 retrocopies |