Parental gene:

Lypla1, ENSRNOG00000008320

Aliases:Lypla1, 25KDL, Pla1a
Description:Acyl-protein thioesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:P70470]
Organism:Rat (Rattus norvegicus)
Coordinates:5:19341835..19370923(-)


>ENSRNOG00000008320
ATGTGCGGCAACAACATGTCCGCCCCGATGCCCGCCGTTGTGCCCGCCGCCCGGAAGGCCACCGCCGCGGTTATTTTCCT
TCACGGATTGGGAGATACTGGGCACGGATGGGCAGAAGCCTTCGCAGGTATCAAAAGTTCCCACATCAAATACATCTGTC
CACATGCGCCTGTTATGCCAGTCACACTAAACATGAGTATGATGATGCCTTCTTGGTTTGATATTATTGGACTTTCACCA
GATTCCCAGGAGGATGAATCTGGAATTAAGCAGGCGGCAGAAACTGTAAAAGCCTTGATAGATCAAGAAGTGAAGAATGG
CATTCCTTCTAACAGAATTATTTTGGGAGGATTTTCTCAGGGAGGCGCCTTATCTTTATACACTGCTCTCACCACACAGC
AGAAACTGGCTGGTGTCACTGCACTCAGTTGCTGGCTTCCACTTCGGGCTTCGTTTTCACAGGGGCCTATCAATAGTGCT
AATCGAGATATTTCTGTTCTCCAGTGTCATGGAGACTGTGACCCTTTAGTTCCCCTAATGTTTGGTTCTCTTACTGTTGA
AAGACTAAAAGGATTGGTAAATCCAGCCAATGTAACCTTCAAAGTCTATGAAGGCATGATGCACAGCTCATGTCAGCAGG
AAATGATGGATGTCAAGTACTTCATTGATAAGCTCCTACCTCCAATTGATTGA

Library Parental gene expression (RPM)
SRP017611_brain 16 .82 RPM
SRP017611_kidney 179 .13 RPM
SRP017611_liver 96 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006978 ortholog_one2many 1 retrogene
retro_cfam_523,
Callithrix jacchus ENSCJAG00000011562 possible_ortholog 2 retrogenes
retro_cjac_1260, retro_cjac_3100,
Cavia porcellus ENSCPOG00000022715 possible_ortholog 3 retrogenes
retro_cpor_142, retro_cpor_549, retro_cpor_782,
Dipodomys ordii ENSDORG00000001479 possible_ortholog 1 retrogene
retro_dord_88,
Equus caballus ENSECAG00000016530 ortholog_one2many 1 retrogene
retro_ecab_238,
Echinops telfairi ENSETEG00000001727 ortholog_one2many 2 retrogenes
retro_etel_612, retro_etel_791,
Homo sapiens ENSG00000120992 possible_ortholog 3 retrogenes
retro_hsap_3078, retro_hsap_3485, retro_hsap_3897,
Myotis lucifugus ENSMLUG00000008208 ortholog_many2many 1 retrogene
retro_mluc_1683,
Macaca mulatta ENSMMUG00000013157 possible_ortholog 3 retrogenes
retro_mmul_1734, retro_mmul_2459, retro_mmul_2474,
Mus musculus ENSMUSG00000025903 ortholog_one2one 1 retrogene
retro_mmus_3700,
Nomascus leucogenys ENSNLEG00000001027 possible_ortholog 4 retrogenes
retro_nleu_1137, retro_nleu_2015, retro_nleu_2817, retro_nleu_2869,
Oryctolagus cuniculus ENSOCUG00000006751 possible_ortholog 3 retrogenes
retro_ocun_1510, retro_ocun_1623, retro_ocun_1679,
Otolemur garnettii ENSOGAG00000003767 ortholog_one2one 3 retrogenes
retro_ogar_1528, retro_ogar_1530, retro_ogar_1532,
Pongo abelii ENSPPYG00000018590 possible_ortholog 3 retrogenes
retro_pabe_2550, retro_pabe_3177, retro_pabe_3565,
Pteropus vampyrus ENSPVAG00000005246 ortholog_one2many 2 retrogenes
retro_pvam_224, retro_pvam_838,
Tupaia belangeri ENSTBEG00000014207 ortholog_one2one 8 retrogenes
retro_tbel_1839, retro_tbel_2439, retro_tbel_2478, retro_tbel_2907, retro_tbel_3127, retro_tbel_3466, retro_tbel_371, retro_tbel_4145,
Tarsius syrichta ENSTSYG00000012350 possible_ortholog 6 retrogenes
retro_tsyr_1287, retro_tsyr_1303, retro_tsyr_1465, retro_tsyr_1901, retro_tsyr_1996, retro_tsyr_2158,
Tursiops truncatus ENSTTRG00000011836 ortholog_one2many 3 retrogenes
retro_ttru_1643, retro_ttru_169, retro_ttru_291,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_406 80.51 51.30
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2. retro_rnor_1747 82.82 98.26
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3. retro_rnor_2612 83.75 69.57
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Download FASTA sequences of all ENSRNOG00000008320 retrocopies