RetrogeneDB ID: | retro_tbel_94 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1099:478974..479764(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12orf29 | ||
Ensembl ID: | ENSTBEG00000005256 | ||
Aliases: | None | ||
Description: | chromosome 12 open reading frame 29 [Source:HGNC Symbol;Acc:25322] |
Percent Identity: | 71.38 % |
Parental protein coverage: | 82.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | GTVCQEGA-SGQPYLWARLDRPNKQADKRFKN-FLHSKENSKEFFWNVEEDFKPVPEYWMPAKEIEQLNG |
GT.C......G.PYLW..LDR........FK..F...K...K..FWNVEEDFKPVPE.W.P.KEIEQLNG | |
Retrocopy | GTYCYMTTYKGHPYLWVQLDRKHNKQANNFKS<FSIRKKTQKNLFWNVEEDFKPVPEDWVPVKEIEQLNG |
Parental | NPVPDE-NGHIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPDDSGL-LEISAVPLSDLLEQTLELV |
N.VPD..NGHIPG.VPV.KN.KQY.WHSSVV.Y..EI.L.LKHHPDDSGL.LEISA..LSDL.EQTL.L. | |
Retrocopy | NLVPDK<NGHIPGCVPVKKNDKQYRWHSSVVHYAIEIVLELKHHPDDSGL<LEISAMALSDLSEQTLGLL |
Parental | GTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPPLKHNDLLSWFEGCREGKIEGIVWHCSDGCLIKVHRH |
G..INGN.YGLGSKKHPLHLLIPHGAFQI.NL..LKHNDLLSWFEGCRE.KI.GIV.H.S.GCLIK.H.. | |
Retrocopy | GKSINGNTYGLGSKKHPLHLLIPHGAFQI-NLLALKHNDLLSWFEGCREAKIKGIV*H*SEGCLIKDHHD |
Parental | HLGLCWPISDTYMNSKPVIINMNLNKYDYTFDTKCLFYHFSKIDNQKFGR-LKDIMLDV |
..GLCWP.SDTYMNSKPVI..MNL.KYDYTFDT.C.FYHFSKID..K.GR.LKDI.L.V | |
Retrocopy | RVGLCWPVSDTYMNSKPVIFYMNLDKYDYTFDTRCMFYHFSKIDH*KSGR>LKDIILNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011011 | 1 retrocopy | |
Homo sapiens | ENSG00000133641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005986 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013286 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015860 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005396 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005277 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006973 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005256 | 1 retrocopy |
retro_tbel_94 ,
|
Tarsius syrichta | ENSTSYG00000014665 | 1 retrocopy |